Variant report

Variant	rs73256598
Chromosome Location	chr4:21864277-21864278
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1040036	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10516402	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11944786	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12498561	0.81[EUR][1000 genomes]
rs12504827	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12512316	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12642992	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12644852	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12650691	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1349383	0.81[EUR][1000 genomes]
rs17569369	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1813583	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2044804	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2044805	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2063656	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063657	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2063658	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34903275	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6840539	0.81[EUR][1000 genomes]
rs73256549	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256551	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256552	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256555	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256556	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256557	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256558	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256559	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256561	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256595	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73256601	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73258503	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9760244	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21862600-21875000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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