Variant report

Variant	rs1349383
Chromosome Location	chr4:21762664-21762665
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21755284..21757367-chr4:21761747..21763856,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10006785	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10016234	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1040036	0.92[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs10516402	0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs10938858	0.89[CEU][hapmap]
rs12498561	0.85[CEU][hapmap]
rs12503736	0.89[CEU][hapmap]
rs12504827	0.88[CEU][hapmap]
rs12512316	0.88[CEU][hapmap]
rs12642992	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs12644852	0.89[EUR][1000 genomes]
rs12650691	0.89[EUR][1000 genomes]
rs168625	0.89[CEU][hapmap]
rs1813583	0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1827591	0.92[CEU][hapmap]
rs1841185	0.89[CEU][hapmap]
rs1841186	0.89[CEU][hapmap]
rs1968778	0.89[CEU][hapmap]
rs2007970	0.92[CEU][hapmap]
rs2007971	0.92[CEU][hapmap]
rs2044804	0.89[EUR][1000 genomes]
rs2044805	0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs2063656	0.93[CEU][hapmap]
rs2063657	0.92[CEU][hapmap]
rs2063658	0.89[CEU][hapmap]
rs34833395	0.89[CEU][hapmap]
rs34903275	0.89[EUR][1000 genomes]
rs4282162	0.85[CEU][hapmap]
rs4377576	0.89[CEU][hapmap]
rs4563486	0.89[CEU][hapmap]
rs6840539	0.81[CEU][hapmap]
rs73256549	0.89[EUR][1000 genomes]
rs73256551	0.89[EUR][1000 genomes]
rs73256552	0.89[EUR][1000 genomes]
rs73256555	0.89[EUR][1000 genomes]
rs73256556	0.89[EUR][1000 genomes]
rs73256557	0.89[EUR][1000 genomes]
rs73256558	0.89[EUR][1000 genomes]
rs73256559	0.89[EUR][1000 genomes]
rs73256561	0.89[EUR][1000 genomes]
rs73256587	0.81[ASN][1000 genomes]
rs73256598	0.81[EUR][1000 genomes]
rs7375384	0.96[CEU][hapmap]
rs7664617	0.84[CEU][hapmap]
rs966045	0.89[CEU][hapmap]
rs9994945	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21752200-21764600	Weak transcription	HMEC	breast
2	chr4:21755400-21764000	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:21762000-21765800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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