Variant report

Variant	rs7664617
Chromosome Location	chr4:21862428-21862429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10012747	0.83[CHB][hapmap]
rs10031539	0.83[CHB][hapmap]
rs10033249	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10034603	0.82[CHB][hapmap]
rs1040036	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10516402	0.88[CEU][hapmap]
rs10938858	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11942219	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11944786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12498561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12503736	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12504827	0.89[CEU][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.83[TSI][hapmap]
rs12512316	0.89[CEU][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.83[TSI][hapmap]
rs12513218	0.82[CHB][hapmap]
rs12642007	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12642061	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12642992	0.89[CEU][hapmap]
rs12643557	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12643656	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12646630	0.83[CHB][hapmap]
rs12649356	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12650029	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12650691	0.82[AMR][1000 genomes]
rs1349383	0.84[CEU][hapmap]
rs1349384	0.83[CHB][hapmap]
rs1380270	0.83[CHB][hapmap]
rs1398833	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1398834	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1459274	0.83[CHB][hapmap]
rs1459277	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1459278	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1459281	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1562815	0.83[CHB][hapmap]
rs168625	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17498679	0.83[CHB][hapmap]
rs17498715	0.86[CHB][hapmap]
rs1809267	0.83[CHB][hapmap]
rs1813583	0.89[CEU][hapmap];0.80[AMR][1000 genomes]
rs1827591	0.85[CEU][hapmap];0.83[CHB][hapmap];0.84[TSI][hapmap]
rs1839523	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1841185	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1841186	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1968778	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs2007970	0.96[CEU][hapmap];0.88[CHB][hapmap]
rs2007971	0.96[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs2012445	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2018175	0.83[CHB][hapmap]
rs2063656	0.92[CEU][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2063657	0.92[CEU][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2063658	0.88[CEU][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2122592	0.82[CHB][hapmap]
rs28409267	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33939152	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34226435	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34384769	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34580494	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34825575	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34833395	0.96[CEU][hapmap];0.88[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35609084	0.83[CHB][hapmap]
rs360687	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs360688	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs360700	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4282162	0.92[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs4377576	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4411977	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4563486	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55777248	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6448069	0.82[CHB][hapmap]
rs6448072	0.83[CHB][hapmap]
rs6448075	0.85[CHB][hapmap]
rs6840539	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6856781	0.82[CHB][hapmap]
rs73256572	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73256581	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73256595	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256598	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73256601	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73258503	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7375384	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs7378252	0.83[CHB][hapmap]
rs9291430	0.82[CHB][hapmap]
rs966045	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9760244	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884923	0.83[CHB][hapmap]
rs9994945	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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