Variant report

Variant	rs12642992
Chromosome Location	chr4:21794415-21794416
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21793571..21796261-chr4:21796696..21799237,2	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10033249	0.85[EUR][1000 genomes]
rs1040036	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10516402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938858	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs11942219	0.85[EUR][1000 genomes]
rs12498561	0.89[CEU][hapmap]
rs12503736	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs12504827	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs12512316	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs12642007	0.85[EUR][1000 genomes]
rs12642061	0.85[EUR][1000 genomes]
rs12643557	0.85[EUR][1000 genomes]
rs12643656	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12644852	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650029	0.85[EUR][1000 genomes]
rs12650691	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1349383	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs1398833	0.83[EUR][1000 genomes]
rs1398834	0.83[EUR][1000 genomes]
rs1459277	0.85[EUR][1000 genomes]
rs1459278	0.85[EUR][1000 genomes]
rs1459281	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs168625	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs17569369	0.86[EUR][1000 genomes]
rs1813583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1827591	0.89[CEU][hapmap]
rs1839523	0.85[EUR][1000 genomes]
rs1841185	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1841186	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs1968778	0.92[CEU][hapmap]
rs2007970	0.96[CEU][hapmap]
rs2007971	0.96[CEU][hapmap]
rs2012445	0.85[EUR][1000 genomes]
rs2044804	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2044805	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063656	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2063657	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2063658	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2122591	0.82[YRI][hapmap]
rs28409267	0.85[EUR][1000 genomes]
rs33939152	0.83[EUR][1000 genomes]
rs34226435	0.85[EUR][1000 genomes]
rs34580494	0.83[EUR][1000 genomes]
rs34825575	0.84[EUR][1000 genomes]
rs34833395	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34903275	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360687	0.85[EUR][1000 genomes]
rs360688	0.85[EUR][1000 genomes]
rs360700	0.85[EUR][1000 genomes]
rs4282162	0.89[CEU][hapmap]
rs4377576	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs4411977	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4563486	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs55777248	0.83[EUR][1000 genomes]
rs6840539	0.85[CEU][hapmap]
rs73256549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256555	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256556	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256557	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256558	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256559	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256561	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73256572	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256581	0.84[EUR][1000 genomes]
rs73256598	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7375384	0.93[CEU][hapmap]
rs7664617	0.89[CEU][hapmap]
rs966045	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs9994945	0.88[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21793200-21794600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:21793200-21794600	Enhancers	Osteobl	bone
3	chr4:21794200-21794600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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