Variant report

Variant	rs4411977
Chromosome Location	chr4:21806985-21806986
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10006785	0.87[EUR][1000 genomes]
rs10016234	0.87[EUR][1000 genomes]
rs10033249	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516402	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10938858	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11942219	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11944786	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12498561	0.88[EUR][1000 genomes]
rs12503736	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12642007	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12642061	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12642992	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12643557	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12643656	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12644852	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12649356	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12650029	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12650691	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1398833	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1398834	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1459277	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1459278	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1459281	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs168625	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1813583	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1839523	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1841185	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1841186	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2012445	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2044804	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2044805	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28409267	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs33939152	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34226435	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34384769	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34580494	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34825575	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34833395	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34903275	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs360687	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs360688	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs360700	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4377576	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4563486	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55777248	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6840539	0.88[EUR][1000 genomes]
rs73256549	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256551	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256552	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256555	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256556	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256557	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256558	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256559	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256561	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73256572	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73256581	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73256595	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256601	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73258503	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs966045	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9760244	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9994945	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21805000-21813200	Weak transcription	HSMMtube	muscle

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