Variant report

Variant	rs10016234
Chromosome Location	chr4:21775563-21775564
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10002460	0.99[ASN][1000 genomes]
rs10006785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10031539	0.97[ASN][1000 genomes]
rs10033249	0.86[EUR][1000 genomes]
rs10938858	0.87[EUR][1000 genomes]
rs11942219	0.86[EUR][1000 genomes]
rs12503736	0.87[EUR][1000 genomes]
rs12642007	0.86[EUR][1000 genomes]
rs12642061	0.86[EUR][1000 genomes]
rs12642578	0.99[ASN][1000 genomes]
rs12643557	0.87[EUR][1000 genomes]
rs12643656	0.87[EUR][1000 genomes]
rs12646630	0.98[ASN][1000 genomes]
rs12650029	0.86[EUR][1000 genomes]
rs1349383	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1349384	0.99[ASN][1000 genomes]
rs1398833	0.87[EUR][1000 genomes]
rs1398834	0.87[EUR][1000 genomes]
rs1459277	0.87[EUR][1000 genomes]
rs1459278	0.87[EUR][1000 genomes]
rs1459281	0.87[EUR][1000 genomes]
rs1471221	0.97[ASN][1000 genomes]
rs1562815	0.99[ASN][1000 genomes]
rs168625	0.87[EUR][1000 genomes]
rs17498679	0.99[ASN][1000 genomes]
rs17498715	0.99[ASN][1000 genomes]
rs1809267	0.99[ASN][1000 genomes]
rs1827591	0.84[EUR][1000 genomes]
rs1839523	0.87[EUR][1000 genomes]
rs1841182	0.97[ASN][1000 genomes]
rs1841185	0.87[EUR][1000 genomes]
rs1841186	0.87[EUR][1000 genomes]
rs1993037	0.99[ASN][1000 genomes]
rs2012445	0.86[EUR][1000 genomes]
rs28409267	0.86[EUR][1000 genomes]
rs28667579	0.83[ASN][1000 genomes]
rs33939152	0.84[EUR][1000 genomes]
rs34226435	0.86[EUR][1000 genomes]
rs34580494	0.84[EUR][1000 genomes]
rs34825575	0.86[EUR][1000 genomes]
rs34833395	0.87[EUR][1000 genomes]
rs35609084	0.98[ASN][1000 genomes]
rs360687	0.87[EUR][1000 genomes]
rs360688	0.86[EUR][1000 genomes]
rs360700	0.86[EUR][1000 genomes]
rs4101631	0.85[EUR][1000 genomes]
rs4377576	0.83[EUR][1000 genomes]
rs4411977	0.87[EUR][1000 genomes]
rs4563486	0.87[EUR][1000 genomes]
rs55777248	0.87[EUR][1000 genomes]
rs6856781	0.99[ASN][1000 genomes]
rs73256572	0.86[EUR][1000 genomes]
rs73256581	0.87[EUR][1000 genomes]
rs7375384	0.85[EUR][1000 genomes]
rs896121	0.99[ASN][1000 genomes]
rs966045	0.87[EUR][1000 genomes]
rs9994945	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv878751	chr4:21712050-21793807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21766600-21780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:21769400-21780400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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