Variant report

Variant	rs2122591
Chromosome Location	chr4:21797859-21797860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21793571..21796261-chr4:21796696..21799237,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10006961	0.84[EUR][1000 genomes]
rs10017728	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs10034770	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs10805229	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11736403	0.82[EUR][1000 genomes]
rs12500976	0.83[EUR][1000 genomes]
rs12501059	0.80[EUR][1000 genomes]
rs12642992	0.82[YRI][hapmap]
rs13108475	0.84[EUR][1000 genomes]
rs13109215	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs13122692	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs13122849	0.89[CEU][hapmap]
rs13147399	0.82[EUR][1000 genomes]
rs1398830	0.83[EUR][1000 genomes]
rs1459281	0.81[CEU][hapmap]
rs1513572	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs16871968	0.80[EUR][1000 genomes]
rs17507672	0.84[EUR][1000 genomes]
rs1841189	0.84[EUR][1000 genomes]
rs2044805	0.82[YRI][hapmap]
rs2175783	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2323127	0.84[EUR][1000 genomes]
rs28635318	0.84[EUR][1000 genomes]
rs35259948	0.84[EUR][1000 genomes]
rs4434239	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4470613	0.82[EUR][1000 genomes]
rs4696984	0.82[EUR][1000 genomes]
rs4696991	0.85[EUR][1000 genomes]
rs4697241	0.89[CEU][hapmap]
rs4697244	0.81[CEU][hapmap]
rs56703551	0.84[EUR][1000 genomes]
rs6448092	0.84[EUR][1000 genomes]
rs6448093	0.84[EUR][1000 genomes]
rs6448098	0.82[CEU][hapmap]
rs6848840	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs715840	0.89[CEU][hapmap]
rs7654180	0.84[EUR][1000 genomes]
rs7668222	0.88[CEU][hapmap]
rs7671494	0.84[EUR][1000 genomes]
rs7696243	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7696754	0.81[EUR][1000 genomes]
rs921380	0.84[EUR][1000 genomes]
rs925574	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs925575	0.83[EUR][1000 genomes]
rs957196	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs966922	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs9985790	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv4269	chr4:21761429-21806056	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1005221	chr4:21786702-21822000	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21794600-21803000	Weak transcription	Muscle Satellite Cultured Cells	--

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