Variant report
| Variant | rs4696991 |
|---|---|
| Chromosome Location | chr4:21863212-21863213 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10009391 | 0.86[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11736403 | 0.84[AMR][1000 genomes] |
| rs12054593 | 0.88[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13102807 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13109215 | 0.81[AMR][1000 genomes] |
| rs13122692 | 0.84[AMR][1000 genomes] |
| rs13148604 | 0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1398830 | 0.84[AMR][1000 genomes] |
| rs1513572 | 0.83[AMR][1000 genomes] |
| rs16871968 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2122591 | 0.85[EUR][1000 genomes] |
| rs2323127 | 0.81[AMR][1000 genomes] |
| rs2323160 | 0.87[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs28600835 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs35998502 | 0.84[ASN][1000 genomes] |
| rs4434239 | 0.84[AMR][1000 genomes] |
| rs4696984 | 0.86[AMR][1000 genomes] |
| rs4697241 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4697244 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs62301421 | 0.81[ASN][1000 genomes] |
| rs6448098 | 0.85[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7658524 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7668222 | 0.84[ASN][1000 genomes] |
| rs868745 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs925574 | 0.85[AMR][1000 genomes] |
| rs925575 | 0.87[AMR][1000 genomes] |
| rs957196 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs987045 | 0.85[AMR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817467 | chr4:21602921-22422816 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21862600-21875000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
