Variant report

Variant	rs7658524
Chromosome Location	chr4:21878792-21878793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10009391	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10034770	0.80[AMR][1000 genomes]
rs11736403	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12054593	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12508810	0.82[ASN][1000 genomes]
rs13102807	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13109215	0.83[AMR][1000 genomes]
rs13122692	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13148604	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1398830	0.86[AMR][1000 genomes]
rs1513572	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16871968	0.86[AMR][1000 genomes]
rs1913327	0.82[ASN][1000 genomes]
rs2323127	0.83[AMR][1000 genomes]
rs2323160	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28600835	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35998502	0.87[ASN][1000 genomes]
rs4434239	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4696984	0.88[AMR][1000 genomes]
rs4696991	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4697241	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4697244	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62301421	0.90[ASN][1000 genomes]
rs6448098	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7668222	0.87[ASN][1000 genomes]
rs7671494	0.80[AMR][1000 genomes]
rs868745	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs921380	0.80[AMR][1000 genomes]
rs925574	0.85[AMR][1000 genomes]
rs925575	0.87[AMR][1000 genomes]
rs957196	0.82[AMR][1000 genomes]
rs987045	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21874400-21879200	Weak transcription	Fetal Heart	heart
2	chr4:21875600-21880800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:21875800-21880600	Weak transcription	Muscle Satellite Cultured Cells	--

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