Variant report

Variant	rs987045
Chromosome Location	chr4:21878552-21878553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10006961	0.81[ASN][1000 genomes]
rs10009391	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10011983	0.84[CHB][hapmap]
rs10012055	0.81[CHB][hapmap]
rs10017728	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes]
rs10028154	0.82[CHB][hapmap]
rs10034770	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes]
rs10805229	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10938864	0.86[JPT][hapmap]
rs11736403	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11930660	0.82[CHB][hapmap]
rs12054593	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12500976	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12501059	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12501226	0.82[CHB][hapmap]
rs12508810	0.90[ASN][1000 genomes]
rs12509958	0.82[CHB][hapmap]
rs12513185	0.85[CHB][hapmap]
rs13102807	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13107915	0.82[CHB][hapmap]
rs13108475	0.82[AMR][1000 genomes]
rs13109215	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13122692	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13122849	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs13143995	0.86[JPT][hapmap]
rs13148604	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1398830	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1450729	0.81[CHB][hapmap]
rs1450730	0.82[CHB][hapmap]
rs1450731	0.82[CHB][hapmap]
rs1459270	0.81[CHB][hapmap]
rs1459271	0.81[CHB][hapmap]
rs1459273	0.81[CHB][hapmap]
rs1513572	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1530816	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs16871968	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17507672	0.84[AMR][1000 genomes]
rs1824366	0.81[CHB][hapmap]
rs1824367	0.82[CHB][hapmap]
rs1827592	0.82[CHB][hapmap]
rs1839525	0.82[CHB][hapmap]
rs1841181	0.82[CHB][hapmap]
rs1841189	0.84[AMR][1000 genomes]
rs1847425	0.86[CHB][hapmap]
rs1868744	0.81[CHB][hapmap]
rs1913327	0.90[ASN][1000 genomes]
rs2017960	0.81[CHB][hapmap]
rs2045555	0.82[CHB][hapmap]
rs2175783	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2323127	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2323160	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28600835	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28635318	0.82[AMR][1000 genomes]
rs35259948	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35998502	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3864177	0.81[CHB][hapmap]
rs4101629	0.82[CHB][hapmap]
rs4434239	0.86[CEU][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4530617	0.82[CHB][hapmap]
rs4550912	0.82[CHB][hapmap]
rs4696984	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4696991	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4697241	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4697244	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56703551	0.84[AMR][1000 genomes]
rs62301421	0.98[ASN][1000 genomes]
rs6414727	0.81[CHB][hapmap]
rs6448074	0.81[CHB][hapmap]
rs6448084	0.81[CHB][hapmap]
rs6448092	0.84[AMR][1000 genomes]
rs6448093	0.84[AMR][1000 genomes]
rs6448098	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6448099	0.86[JPT][hapmap]
rs6838654	0.81[CHB][hapmap]
rs6838747	0.81[CHB][hapmap]
rs715840	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs717531	0.81[CHB][hapmap]
rs7654180	0.82[AMR][1000 genomes]
rs7658524	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7668222	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7671494	0.83[AMR][1000 genomes]
rs7696243	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes]
rs7696754	0.81[AMR][1000 genomes]
rs7697475	0.81[CHB][hapmap]
rs868745	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs896122	0.82[CHB][hapmap]
rs921380	0.83[AMR][1000 genomes]
rs925574	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs925575	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs957196	0.81[AMR][1000 genomes]
rs966922	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes]
rs9985790	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21874400-21879200	Weak transcription	Fetal Heart	heart
2	chr4:21875600-21880800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:21875800-21880600	Weak transcription	Muscle Satellite Cultured Cells	--

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