Variant report

Variant	rs563302644
Chromosome Location	chr6:149863872-149863873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149863453..149865159-chr6:149871919..149873635,2	MCF-7	breast:
2	chr6:149863614..149866317-chr6:150041414..150044208,2	K562	blood:
3	chr6:149412160..149414295-chr6:149861295..149864069,2	K562	blood:
4	chr6:149863419..149867530-chr6:149880344..149883161,3	K562	blood:
5	chr6:149855188..149859301-chr6:149860677..149864664,6	K562	blood:
6	chr6:149862349..149865484-chr6:149865615..149868739,5	MCF-7	breast:
7	chr6:149851362..149854820-chr6:149861606..149865173,4	K562	blood:

Variant related genes	Relation type
ENSG00000131013	Chromatin interaction
ENSG00000235168	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149820600-149865200	Weak transcription	Stomach Mucosa	stomach
2	chr6:149824600-149864200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:149830600-149865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:149832000-149865800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:149837400-149866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:149841200-149865200	Weak transcription	Fetal Heart	heart
7	chr6:149849400-149865200	Weak transcription	Psoas Muscle	Psoas
8	chr6:149850800-149865600	Weak transcription	Right Ventricle	heart
9	chr6:149852400-149865800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:149855600-149865200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:149855800-149865200	Weak transcription	Hela-S3	cervix
12	chr6:149860800-149865200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:149860800-149865400	Weak transcription	Colonic Mucosa	Colon
14	chr6:149860800-149865400	Weak transcription	Fetal Brain Male	brain
15	chr6:149861000-149864000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr6:149861000-149864000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:149861000-149864000	Weak transcription	Fetal Brain Female	brain
18	chr6:149861000-149864000	Weak transcription	NH-A	brain
19	chr6:149861000-149864800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:149861000-149865200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:149861000-149865200	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:149861000-149865200	Weak transcription	Gastric	stomach
23	chr6:149861000-149865400	Weak transcription	A549	lung
24	chr6:149861000-149865400	Weak transcription	HUVEC	blood vessel
25	chr6:149861000-149865600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:149861000-149865600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:149861000-149865800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:149861200-149864200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:149861200-149865800	Weak transcription	Aorta	Aorta
30	chr6:149861200-149865800	Weak transcription	Esophagus	oesophagus
31	chr6:149861600-149864400	Weak transcription	NHEK	skin
32	chr6:149861600-149865200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:149861600-149865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:149861600-149865400	Weak transcription	Brain Substantia Nigra	brain
35	chr6:149861600-149865400	Weak transcription	HSMMtube	muscle
36	chr6:149861800-149865000	Weak transcription	Brain Germinal Matrix	brain
37	chr6:149861800-149865200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:149861800-149865200	Weak transcription	Fetal Intestine Small	intestine
39	chr6:149861800-149865200	Weak transcription	Spleen	Spleen
40	chr6:149861800-149865600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:149861800-149865600	Weak transcription	Fetal Stomach	stomach
42	chr6:149861800-149865800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:149861800-149865800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:149861800-149865800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:149861800-149865800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr6:149861800-149865800	Weak transcription	Lung	lung
47	chr6:149861800-149865800	Weak transcription	Pancreas	Pancrea
48	chr6:149862000-149864800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:149862000-149865200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr6:149862200-149864200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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