Variant report

Variant	nsv966665
Chromosome Location	chr6:149862756-149895103
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2078)
CpG islands
(count:1710)
Chromatin interactive
region (count:74)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2078 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:149886279-149886406	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:149888048-149888244	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:149867025-149867733	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:149886665-149887092	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:149886697-149887266	K562	blood:	n/a	n/a
6	ARID3A	chr6:149881799-149881999	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:149867131-149867424	K562	blood:	n/a	n/a
8	ATF1	chr6:149866952-149867919	K562	blood:	n/a	n/a
9	ATF1	chr6:149866185-149866751	K562	blood:	n/a	n/a
10	ATF2	chr6:149866980-149867432	H1-hESC	embryonic stem cell:	n/a	n/a
11	ATF2	chr6:149886462-149887374	GM12878	blood:	n/a	n/a
12	ATF2	chr6:149866820-149867605	GM12878	blood:	n/a	n/a
13	ATF2	chr6:149886581-149887245	GM12878	blood:	n/a	n/a
14	ATF2	chr6:149866643-149867603	GM12878	blood:	n/a	n/a
15	ATF2	chr6:149888009-149888393	H1-hESC	embryonic stem cell:	n/a	n/a
16	ATF2	chr6:149887992-149889571	GM12878	blood:	n/a	n/a
17	ATF2	chr6:149866988-149867601	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF3	chr6:149866926-149867543	K562	blood:	n/a	chr6:149867350-149867359 chr6:149867243-149867263
19	ATF3	chr6:149866927-149867416	H1-hESC	embryonic stem cell:	n/a	chr6:149867350-149867359 chr6:149867243-149867263
20	ATF3	chr6:149867099-149867415	GM12878	blood:	n/a	chr6:149867350-149867359 chr6:149867243-149867263
21	ATF3	chr6:149867030-149867572	HepG2	liver:	n/a	chr6:149867350-149867359 chr6:149867243-149867263
22	ATF3	chr6:149867123-149867591	A549	lung:	n/a	chr6:149867350-149867359 chr6:149867243-149867263
23	ATF3	chr6:149866969-149867531	GM12878	blood:	n/a	chr6:149867350-149867359 chr6:149867243-149867263
24	ATF3	chr6:149866964-149867636	K562	blood:	n/a	chr6:149867350-149867359 chr6:149867243-149867263
25	ATF3	chr6:149866961-149867613	K562	blood:	n/a	chr6:149867350-149867359 chr6:149867243-149867263
26	ATF3	chr6:149866949-149867588	H1-hESC	embryonic stem cell:	n/a	chr6:149867350-149867359 chr6:149867243-149867263
27	ATF3	chr6:149866926-149867588	HepG2	liver:	n/a	chr6:149867350-149867359 chr6:149867243-149867263
28	BACH1	chr6:149867109-149867611	H1-hESC	embryonic stem cell:	n/a	n/a
29	BACH1	chr6:149886878-149887267	H1-hESC	embryonic stem cell:	n/a	n/a
30	BACH1	chr6:149868556-149868589	H1-hESC	embryonic stem cell:	n/a	n/a
31	BACH1	chr6:149867298-149867435	K562	blood:	n/a	n/a
32	BACH1	chr6:149887538-149888320	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr6:149866227-149866688	K562	blood:	n/a	n/a
34	BATF	chr6:149867070-149867356	GM12878	blood:	n/a	n/a
35	BATF	chr6:149888415-149888669	GM12878	blood:	n/a	n/a
36	BATF	chr6:149886755-149887075	GM12878	blood:	n/a	n/a
37	BCL3	chr6:149886665-149887201	GM12878	blood:	n/a	n/a
38	BCL3	chr6:149866965-149867515	GM12878	blood:	n/a	chr6:149867260-149867269 chr6:149867307-149867320
39	BCL3	chr6:149867098-149867600	A549	lung:	n/a	chr6:149867260-149867269 chr6:149867307-149867320
40	BCLAF1	chr6:149866959-149867751	GM12878	blood:	n/a	chr6:149867260-149867269 chr6:149867307-149867320
41	BCLAF1	chr6:149887828-149888460	GM12878	blood:	n/a	n/a
42	BCLAF1	chr6:149867045-149867749	K562	blood:	n/a	chr6:149867260-149867269 chr6:149867307-149867320
43	BCLAF1	chr6:149886493-149887329	GM12878	blood:	n/a	n/a
44	BCLAF1	chr6:149886562-149887119	GM12878	blood:	n/a	n/a
45	BCLAF1	chr6:149866919-149867626	GM12878	blood:	n/a	chr6:149867260-149867269 chr6:149867307-149867320
46	BHLHE40	chr6:149886614-149887199	K562	blood:	n/a	n/a
47	BHLHE40	chr6:149886574-149887288	GM12878	blood:	n/a	n/a
48	BHLHE40	chr6:149866174-149867667	K562	blood:	n/a	chr6:149867498-149867514 chr6:149866945-149866961 chr6:149867343-149867359
49	BHLHE40	chr6:149866226-149866762	HepG2	liver:	n/a	n/a
50	BHLHE40	chr6:149866988-149867522	HepG2	liver:	n/a	chr6:149867498-149867514 chr6:149867343-149867359

(count:1710 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:149886971-149887021	HL-60	blood:	n/a
2	chr6:149867607-149867657	MCF10A-Er-Src	breast:	n/a
3	chr6:149886971-149887021	HL-60	blood:	n/a
4	chr6:149867607-149867657	MCF10A-Er-Src	breast:	n/a
5	chr6:149867144-149867194	Caco-2	colon:	n/a
6	chr6:149887504-149887554	HMEC	breast:	n/a
7	chr6:149885006-149885056	HRPEpiC	eye:	n/a
8	chr6:149886883-149886933	Jurkat	blood:	n/a
9	chr6:149887296-149887346	SK-N-SH_RA	brain:	n/a
10	chr6:149867442-149867492	PFSK-1	brain:	n/a
11	chr6:149887318-149887368	Hela-S3	cervix:	n/a
12	chr6:149867359-149867409	HIPEpiC	eye:	n/a
13	chr6:149867607-149867657	NHDF-neo	bronchial:	n/a
14	chr6:149886971-149887021	HRCEpiC	kidney:	n/a
15	chr6:149887296-149887346	HAEpiC	amniotic membrane:	n/a
16	chr6:149887876-149887926	HL-60	blood:	n/a
17	chr6:149866213-149866263	HL-60	blood:	n/a
18	chr6:149867208-149867258	HMEC	breast:	n/a
19	chr6:149887573-149887623	ovcar-3	ovarian:	n/a
20	chr6:149867353-149867403	NB4	blood:	n/a
21	chr6:149867235-149867285	SK-N-SH_RA	brain:	n/a
22	chr6:149887296-149887346	HCM	heart:	n/a
23	chr6:149867378-149867428	LNCaP	prostate:	n/a
24	chr6:149887498-149887548	HCF	heart:	n/a
25	chr6:149867607-149867657	SK-N-SH_RA	brain:	n/a
26	chr6:149867939-149867989	U87	brain:	n/a
27	chr6:149867607-149867657	NH-A	brain:	n/a
28	chr6:149887573-149887623	AoSMC	blood vessel:	n/a
29	chr6:149891579-149891629	SAEC	small airway:	n/a
30	chr6:149887876-149887926	U87	brain:	n/a
31	chr6:149885006-149885056	HCPEpiC	choroid plexus:	n/a
32	chr6:149888373-149888423	U87	brain:	n/a
33	chr6:149869713-149869763	K562	blood:	n/a
34	chr6:149863603-149863653	HCPEpiC	choroid plexus:	n/a
35	chr6:149867442-149867492	HUVEC	blood vessel:	n/a
36	chr6:149886976-149887026	SKMC	muscle:	n/a
37	chr6:149887498-149887548	LNCaP	prostate:	n/a
38	chr6:149867144-149867194	HCF	heart:	n/a
39	chr6:149887296-149887346	NT2-D1	testis:	n/a
40	chr6:149869713-149869763	NHDF-neo	bronchial:	n/a
41	chr6:149867355-149867405	AoSMC	blood vessel:	n/a
42	chr6:149867378-149867428	PANC-1	pancreas:	n/a
43	chr6:149867144-149867194	CMK	blood:	n/a
44	chr6:149867359-149867409	T-47D	breast:	n/a
45	chr6:149886971-149887021	GM19239	blood:	n/a
46	chr6:149886976-149887026	HMEC	breast:	n/a
47	chr6:149867378-149867428	H1-hESC	embryonic stem cell:	embryo
48	chr6:149887573-149887623	ProgFib	skin:	n/a
49	chr6:149886883-149886933	SAEC	small airway:	n/a
50	chr6:149887296-149887346	AG10803	skin:	n/a

(count:74 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:149894790..149896542-chr6:149899251..149901675,2	MCF-7	breast:
2	chr6:149887503..149889427-chr6:149890997..149894118,3	MCF-7	breast:
3	chr6:149863889..149870301-chr6:149880315..149888361,14	K562	blood:
4	chr6:149865491..149867139-chr6:149970977..149973867,2	K562	blood:
5	chr6:149867355..149868856-chr6:150068563..150070825,2	K562	blood:
6	chr6:149865611..149871097-chr6:149883709..149888968,8	K562	blood:
7	chr6:149638315..149640262-chr6:149865472..149868393,2	K562	blood:
8	chr6:149865149..149869984-chr6:149967517..149970273,6	K562	blood:
9	chr13:79980255..79980778-chr6:149887542..149888222,2	Hela-S3	cervix:
10	chr6:149864361..149868960-chr6:149967728..149970352,9	K562	blood:
11	chr6:149867328..149869221-chr6:150039262..150040836,2	K562	blood:
12	chr6:149865589..149867401-chr6:150242514..150245357,2	MCF-7	breast:
13	chr6:149884418..149886657-chr6:150140173..150142192,2	K562	blood:
14	chr6:149891775..149893558-chr6:149966208..149969177,2	K562	blood:
15	chr6:149866797..149869221-chr6:150037385..150040762,4	K562	blood:
16	chr6:149851362..149854820-chr6:149861606..149865173,4	K562	blood:
17	chr6:149886600..149889254-chr6:149889358..149891247,3	MCF-7	breast:
18	chr6:149867313..149867877-chr6:149969644..149970265,2	MCF-7	breast:
19	chr6:149855188..149859301-chr6:149860677..149864664,6	K562	blood:
20	chr6:149885317..149886965-chr6:149968680..149971037,2	MCF-7	breast:
21	chr6:149865922..149868686-chr6:149869430..149871815,2	MCF-7	breast:
22	chr6:149886502..149888168-chr6:150070978..150072960,2	K562	blood:
23	chr6:149872383..149874972-chr6:149968144..149970810,2	K562	blood:
24	chr6:149833219..149834722-chr6:149885011..149886863,2	K562	blood:
25	chr6:149887497..149889067-chr6:149953634..149955368,2	K562	blood:
26	chr6:149891208..149893657-chr6:149895045..149897012,2	K562	blood:
27	chr6:149866078..149868116-chr6:151710633..151713290,2	MCF-7	breast:
28	chr6:149867616..149870939-chr6:149871869..149874577,3	K562	blood:
29	chr6:149887503..149889427-chr6:149890997..149894118,3	MCF-7	breast:
30	chr6:149871886..149874097-chr6:149885143..149886769,2	K562	blood:
31	chr6:149887426..149891060-chr6:150037726..150040656,4	K562	blood:
32	chr6:149863614..149866317-chr6:150041414..150044208,2	K562	blood:
33	chr6:149888124..149890319-chr6:149910443..149912439,2	MCF-7	breast:
34	chr6:149862349..149865484-chr6:149865615..149868739,5	MCF-7	breast:
35	chr6:149858502..149860494-chr6:149865372..149866981,2	MCF-7	breast:
36	chr6:149886793..149887314-chr6:150038696..150039225,2	MCF-7	breast:
37	chr6:149865631..149868201-chr6:150184694..150186592,2	MCF-7	breast:
38	chr6:149863419..149867530-chr6:149880344..149883161,3	K562	blood:
39	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
40	chr6:149865819..149869096-chr6:149885709..149888757,8	MCF-7	breast:
41	chr6:149887413..149889033-chr6:149958089..149960817,2	K562	blood:
42	chr6:149412160..149414295-chr6:149861295..149864069,2	K562	blood:
43	chr6:149894224..149896092-chr6:149966724..149969015,2	K562	blood:
44	chr6:149872312..149874761-chr6:149886918..149888794,2	K562	blood:
45	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
46	chr6:149865611..149871097-chr6:149883709..149888968,8	K562	blood:
47	chr6:149867194..149867778-chr6:150247038..150247929,2	MCF-7	breast:
48	chr6:149866042..149868697-chr6:149869161..149871051,2	K562	blood:
49	chr6:149891208..149893657-chr6:149895045..149897012,2	K562	blood:
50	chr6:149886717..149888905-chr6:150037583..150040474,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf72-1	chr6:149884786-149885085	XLOC_005498
2	lnc-C6orf72-1	chr6:149882288-149882365	XLOC_005498

No data

Variant related genes	Relation type
PPIL4	TF binding region
GINM1	TF binding region
ENSG00000235168	TF binding region
PPIL4	CpG island
GINM1	CpG island
ENSG00000235168	CpG island
ENSG00000131013	chromatin interactions
ENSG00000055211	chromatin interactions
ENSG00000131023	chromatin interactions
ENSG00000235168	chromatin interactions
ENSG00000203722	chromatin interactions
ENSG00000186625	chromatin interactions
ENSG00000227354	chromatin interactions
ENSG00000120256	chromatin interactions
ENSG00000181472	chromatin interactions
ENSG00000120265	chromatin interactions
ENSG00000139746	chromatin interactions
ENSG00000120253	chromatin interactions
ENSG00000055208	chromatin interactions

Extended variants
information (count: 1071 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:1071 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375089834	chr6:149862769-149862770	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs60910760	chr6:149862798-149862799	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs561587365	chr6:149862823-149862824	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs529658825	chr6:149862825-149862826	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs543488955	chr6:149862869-149862870	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs115085646	chr6:149862885-149862886	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs532281527	chr6:149863018-149863019	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs552280963	chr6:149863037-149863038	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs368351331	chr6:149863043-149863044	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs557964622	chr6:149863129-149863130	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs9322185	chr6:149863144-149863145	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs529079776	chr6:149863149-149863150	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs528257020	chr6:149863176-149863177	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs74887447	chr6:149863178-149863179	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs76739384	chr6:149863179-149863180	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs548199818	chr6:149863202-149863203	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs533229179	chr6:149863214-149863215	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs568300689	chr6:149863299-149863300	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs536945617	chr6:149863325-149863326	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs376170899	chr6:149863392-149863393	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs188273327	chr6:149863394-149863395	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs377304416	chr6:149863415-149863416	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs140206262	chr6:149863442-149863443	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs538766695	chr6:149863479-149863480	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs558590400	chr6:149863562-149863563	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs572561234	chr6:149863567-149863568	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs543513110	chr6:149863625-149863626	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs541566142	chr6:149863674-149863675	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs181198406	chr6:149863682-149863683	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs149632821	chr6:149863689-149863690	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs9766288	chr6:149863744-149863745	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs185643420	chr6:149863778-149863779	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs199762227	chr6:149863787-149863788	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs397787246	chr6:149863794-149863795	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs563302644	chr6:149863872-149863873	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs191222560	chr6:149863894-149863895	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs76356487	chr6:149863908-149863909	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs559361541	chr6:149863953-149863954	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs528280875	chr6:149863969-149863970	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs371815479	chr6:149864046-149864047	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs116315241	chr6:149864051-149864052	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs201534557	chr6:149864092-149864093	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs530739544	chr6:149864095-149864096	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs550429748	chr6:149864101-149864102	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs375192375	chr6:149864106-149864107	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs28477146	chr6:149864115-149864116	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs35717230	chr6:149864155-149864156	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs569728121	chr6:149864168-149864169	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs17087775	chr6:149864247-149864248	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs552255676	chr6:149864266-149864267	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
Cancer	17160897	CNVD
Breast cancer	17417639	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20556506	CNVD
Hirschsprung''s Disease	21712996	CNVD
Testicular germ cell tumor	18059402	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1333 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149820600-149865200	Weak transcription	Stomach Mucosa	stomach
2	chr6:149824600-149864200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:149830600-149865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:149832000-149865800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:149835000-149863600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:149836400-149862800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:149837400-149866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:149838800-149863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:149839000-149863800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:149839800-149862800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:149840400-149862800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:149840600-149863600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:149841200-149865200	Weak transcription	Fetal Heart	heart
14	chr6:149847400-149862800	Strong transcription	K562	blood
15	chr6:149849400-149865200	Weak transcription	Psoas Muscle	Psoas
16	chr6:149850800-149865600	Weak transcription	Right Ventricle	heart
17	chr6:149852400-149865800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:149855600-149863800	Weak transcription	Small Intestine	intestine
19	chr6:149855600-149865200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:149855800-149865200	Weak transcription	Hela-S3	cervix
21	chr6:149858800-149862800	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr6:149859600-149863200	Strong transcription	HepG2	liver
23	chr6:149860800-149865200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:149860800-149865400	Weak transcription	Colonic Mucosa	Colon
25	chr6:149860800-149865400	Weak transcription	Fetal Brain Male	brain
26	chr6:149861000-149863600	Weak transcription	Primary T cells from cord blood	blood
27	chr6:149861000-149863600	Weak transcription	Brain Angular Gyrus	brain
28	chr6:149861000-149863600	Weak transcription	GM12878-XiMat	blood
29	chr6:149861000-149863800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:149861000-149864000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:149861000-149864000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:149861000-149864000	Weak transcription	Fetal Brain Female	brain
33	chr6:149861000-149864000	Weak transcription	NH-A	brain
34	chr6:149861000-149864800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:149861000-149865200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:149861000-149865200	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:149861000-149865200	Weak transcription	Gastric	stomach
38	chr6:149861000-149865400	Weak transcription	A549	lung
39	chr6:149861000-149865400	Weak transcription	HUVEC	blood vessel
40	chr6:149861000-149865600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:149861000-149865600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:149861000-149865800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:149861200-149864200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:149861200-149865800	Weak transcription	Aorta	Aorta
45	chr6:149861200-149865800	Weak transcription	Esophagus	oesophagus
46	chr6:149861600-149863600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:149861600-149864400	Weak transcription	NHEK	skin
48	chr6:149861600-149865200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:149861600-149865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:149861600-149865400	Weak transcription	Brain Substantia Nigra	brain

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