Variant report

Variant	rs17087775
Chromosome Location	chr6:149864247-149864248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149863453..149865159-chr6:149871919..149873635,2	MCF-7	breast:
2	chr6:149863614..149866317-chr6:150041414..150044208,2	K562	blood:
3	chr6:149863889..149870301-chr6:149880315..149888361,14	K562	blood:
4	chr6:149863419..149867530-chr6:149880344..149883161,3	K562	blood:
5	chr6:149864025..149866491-chr6:150038497..150040918,2	K562	blood:
6	chr6:149855188..149859301-chr6:149860677..149864664,6	K562	blood:
7	chr6:149862349..149865484-chr6:149865615..149868739,5	MCF-7	breast:
8	chr6:149851362..149854820-chr6:149861606..149865173,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000235168	Chromatin interaction
ENSG00000055211	Chromatin interaction
ENSG00000131023	Chromatin interaction
ENSG00000131013	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs28692896	1.00[AMR][1000 genomes]
rs6911686	1.00[AMR][1000 genomes]
rs6911796	1.00[AMR][1000 genomes]
rs73781228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9478410	1.00[AMR][1000 genomes]
rs9479096	1.00[AMR][1000 genomes]
rs9479409	1.00[AMR][1000 genomes]
rs9479583	1.00[AMR][1000 genomes]
rs9479588	1.00[AMR][1000 genomes]
rs9479882	1.00[AMR][1000 genomes]
rs9480114	1.00[AMR][1000 genomes]
rs9485398	1.00[AMR][1000 genomes]
rs9498377	1.00[AMR][1000 genomes]
rs9498386	1.00[AMR][1000 genomes]
rs9498388	1.00[AMR][1000 genomes]
rs9498389	1.00[AMR][1000 genomes]
rs9505828	1.00[AMR][1000 genomes]
rs9505988	1.00[AMR][1000 genomes]
rs9505990	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149820600-149865200	Weak transcription	Stomach Mucosa	stomach
2	chr6:149830600-149865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:149832000-149865800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:149837400-149866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:149841200-149865200	Weak transcription	Fetal Heart	heart
6	chr6:149849400-149865200	Weak transcription	Psoas Muscle	Psoas
7	chr6:149850800-149865600	Weak transcription	Right Ventricle	heart
8	chr6:149852400-149865800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:149855600-149865200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:149855800-149865200	Weak transcription	Hela-S3	cervix
11	chr6:149860800-149865200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:149860800-149865400	Weak transcription	Colonic Mucosa	Colon
13	chr6:149860800-149865400	Weak transcription	Fetal Brain Male	brain
14	chr6:149861000-149864800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:149861000-149865200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:149861000-149865200	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:149861000-149865200	Weak transcription	Gastric	stomach
18	chr6:149861000-149865400	Weak transcription	A549	lung
19	chr6:149861000-149865400	Weak transcription	HUVEC	blood vessel
20	chr6:149861000-149865600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:149861000-149865600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:149861000-149865800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:149861200-149865800	Weak transcription	Aorta	Aorta
24	chr6:149861200-149865800	Weak transcription	Esophagus	oesophagus
25	chr6:149861600-149864400	Weak transcription	NHEK	skin
26	chr6:149861600-149865200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:149861600-149865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:149861600-149865400	Weak transcription	Brain Substantia Nigra	brain
29	chr6:149861600-149865400	Weak transcription	HSMMtube	muscle
30	chr6:149861800-149865000	Weak transcription	Brain Germinal Matrix	brain
31	chr6:149861800-149865200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:149861800-149865200	Weak transcription	Fetal Intestine Small	intestine
33	chr6:149861800-149865200	Weak transcription	Spleen	Spleen
34	chr6:149861800-149865600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:149861800-149865600	Weak transcription	Fetal Stomach	stomach
36	chr6:149861800-149865800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:149861800-149865800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:149861800-149865800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:149861800-149865800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:149861800-149865800	Weak transcription	Lung	lung
41	chr6:149861800-149865800	Weak transcription	Pancreas	Pancrea
42	chr6:149862000-149864800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:149862000-149865200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr6:149862200-149864400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:149862200-149864800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr6:149862200-149864800	Weak transcription	Fetal Intestine Large	intestine
47	chr6:149862200-149865000	Weak transcription	Adipose Nuclei	Adipose
48	chr6:149862200-149865000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr6:149862200-149865000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:149862200-149865000	Weak transcription	Osteobl	bone

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