Variant report

Variant	rs9485398
Chromosome Location	chr6:149842142-149842143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149763319..149765484-chr6:149839894..149842239,2	MCF-7	breast:
2	chr6:149352912..149354460-chr6:149841188..149844110,2	MCF-7	breast:
3	chr6:149840862..149843868-chr6:149845799..149849456,4	K562	blood:

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17087775	1.00[AMR][1000 genomes]
rs28692896	1.00[AMR][1000 genomes]
rs60038742	1.00[AMR][1000 genomes]
rs6911686	1.00[AMR][1000 genomes]
rs6911796	1.00[AMR][1000 genomes]
rs73781228	1.00[AMR][1000 genomes]
rs9478410	1.00[AMR][1000 genomes]
rs9479096	1.00[AMR][1000 genomes]
rs9479409	1.00[AMR][1000 genomes]
rs9479583	1.00[AMR][1000 genomes]
rs9479588	1.00[AMR][1000 genomes]
rs9498377	1.00[AMR][1000 genomes]
rs9498386	1.00[AMR][1000 genomes]
rs9498388	1.00[AMR][1000 genomes]
rs9498389	1.00[AMR][1000 genomes]
rs9505828	1.00[AMR][1000 genomes]
rs9505988	1.00[AMR][1000 genomes]
rs9505990	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149806400-149844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:149807000-149849000	Weak transcription	Gastric	stomach
3	chr6:149807200-149842600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:149810800-149851600	Weak transcription	Esophagus	oesophagus
5	chr6:149811200-149860600	Weak transcription	Aorta	Aorta
6	chr6:149815600-149845000	Weak transcription	Small Intestine	intestine
7	chr6:149818400-149843800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:149818800-149845000	Weak transcription	A549	lung
9	chr6:149820400-149845200	Weak transcription	Hela-S3	cervix
10	chr6:149820400-149849000	Weak transcription	Psoas Muscle	Psoas
11	chr6:149820400-149850200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:149820600-149842600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:149820600-149847800	Weak transcription	Brain Substantia Nigra	brain
14	chr6:149820600-149851400	Weak transcription	NHLF	lung
15	chr6:149820600-149865200	Weak transcription	Stomach Mucosa	stomach
16	chr6:149820800-149848200	Weak transcription	Pancreas	Pancrea
17	chr6:149822600-149845000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:149823800-149851800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:149824200-149842600	Weak transcription	Brain Germinal Matrix	brain
20	chr6:149824200-149846000	Weak transcription	Fetal Brain Male	brain
21	chr6:149824400-149862200	Strong transcription	Liver	Liver
22	chr6:149824600-149864200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:149825000-149851800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:149825200-149850200	Weak transcription	Right Ventricle	heart
25	chr6:149826000-149847600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:149829600-149851600	Weak transcription	Colonic Mucosa	Colon
27	chr6:149829800-149842200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:149830600-149865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:149831400-149851800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:149832000-149865800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:149832200-149862200	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr6:149832600-149842200	Weak transcription	K562	blood
33	chr6:149832800-149844800	Weak transcription	Ovary	ovary
34	chr6:149832800-149850200	Weak transcription	Lung	lung
35	chr6:149833400-149844000	Weak transcription	HSMMtube	muscle
36	chr6:149833400-149844400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr6:149833400-149845000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:149833600-149844600	Weak transcription	Brain Angular Gyrus	brain
39	chr6:149834400-149842200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:149835000-149862000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:149835000-149862200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:149835000-149862200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:149835000-149862200	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr6:149835000-149863600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:149835200-149862400	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr6:149835400-149850400	Weak transcription	Spleen	Spleen
47	chr6:149835600-149842200	Weak transcription	NHEK	skin
48	chr6:149835600-149843800	Weak transcription	Fetal Stomach	stomach
49	chr6:149835600-149844200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:149835800-149843800	Weak transcription	Fetal Intestine Small	intestine

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