Variant report
| Variant | rs73781228 |
|---|---|
| Chromosome Location | chr6:149870870-149870871 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:149867616..149870939-chr6:149871869..149874577,3 | K562 | blood: | |
| 2 | chr6:149865922..149868686-chr6:149869430..149871815,2 | MCF-7 | breast: | |
| 3 | chr6:149865611..149871097-chr6:149883709..149888968,8 | K562 | blood: | |
| 4 | chr6:149866042..149868697-chr6:149869161..149871051,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000131013 | Chromatin interaction |
| ENSG00000055211 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs17087775 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28692896 | 1.00[AMR][1000 genomes] |
| rs6911686 | 1.00[AMR][1000 genomes] |
| rs6911796 | 1.00[AMR][1000 genomes] |
| rs9478410 | 1.00[AMR][1000 genomes] |
| rs9479096 | 1.00[AMR][1000 genomes] |
| rs9479409 | 1.00[AMR][1000 genomes] |
| rs9479583 | 1.00[AMR][1000 genomes] |
| rs9479588 | 1.00[AMR][1000 genomes] |
| rs9479882 | 1.00[AMR][1000 genomes] |
| rs9480114 | 1.00[AMR][1000 genomes] |
| rs9485398 | 1.00[AMR][1000 genomes] |
| rs9498377 | 1.00[AMR][1000 genomes] |
| rs9498386 | 1.00[AMR][1000 genomes] |
| rs9498388 | 1.00[AMR][1000 genomes] |
| rs9498389 | 1.00[AMR][1000 genomes] |
| rs9505828 | 1.00[AMR][1000 genomes] |
| rs9505988 | 1.00[AMR][1000 genomes] |
| rs9505990 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv966665 | chr6:149862756-149895103 | Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv289 | chr6:149864898-149998818 | Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv5534 | chr6:149864898-149998818 | Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 4 | nsv886762 | chr6:149866452-150174507 | Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:149868000-149873000 | Weak transcription | Gastric | stomach |
| 2 | chr6:149868000-149873400 | Weak transcription | Fetal Heart | heart |
