Variant report

Variant	rs9479882
Chromosome Location	chr6:150074434-150074435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150071337..150080563-chr6:150080588..150087592,16	K562	blood:
2	chr6:150073818..150075342-chr6:150092909..150094549,2	K562	blood:
3	chr6:150072577..150074857-chr6:150088805..150091239,2	K562	blood:
4	chr6:150037162..150039500-chr6:150073081..150075697,2	K562	blood:
5	chr6:150074165..150075922-chr6:150081049..150082731,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17087775	1.00[AMR][1000 genomes]
rs28692896	1.00[AMR][1000 genomes]
rs73781228	1.00[AMR][1000 genomes]
rs9478410	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9479096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9479409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9479583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9479588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480479	0.81[AFR][1000 genomes]
rs9498377	1.00[AMR][1000 genomes]
rs9498386	1.00[AMR][1000 genomes]
rs9498388	1.00[AMR][1000 genomes]
rs9498389	1.00[AMR][1000 genomes]
rs9505828	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9505976	1.00[AMR][1000 genomes]
rs9505978	0.81[AFR][1000 genomes]
rs9505988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9505990	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150071600-150075200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr6:150071800-150081200	Weak transcription	Spleen	Spleen
3	chr6:150071800-150092600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:150071800-150092800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:150071800-150100200	Weak transcription	Gastric	stomach
6	chr6:150072000-150074800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:150072000-150075000	Enhancers	Liver	Liver
8	chr6:150072000-150075600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:150072000-150076600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:150072000-150081000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:150072000-150081200	Weak transcription	Placenta	Placenta
12	chr6:150072000-150081600	Weak transcription	Fetal Stomach	stomach
13	chr6:150072000-150086800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:150072000-150087000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:150072000-150087200	Weak transcription	Stomach Mucosa	stomach
16	chr6:150072000-150094200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:150072000-150111000	Weak transcription	Fetal Kidney	kidney
18	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
19	chr6:150072200-150075200	Weak transcription	Brain Substantia Nigra	brain
20	chr6:150072200-150075600	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:150072200-150075800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:150072200-150076200	Weak transcription	Right Atrium	heart
23	chr6:150072200-150076800	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:150072200-150077000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:150072200-150080800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:150072200-150081000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:150072200-150081000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:150072200-150081200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:150072200-150087000	Weak transcription	Fetal Lung	lung
30	chr6:150072200-150087200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:150072200-150087200	Weak transcription	Primary T cells from cord blood	blood
32	chr6:150072200-150087200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:150072200-150087200	Weak transcription	NH-A	brain
34	chr6:150072400-150075000	Weak transcription	Brain Anterior Caudate	brain
35	chr6:150072400-150075800	Weak transcription	Pancreas	Pancrea
36	chr6:150072400-150075800	Weak transcription	Right Ventricle	heart
37	chr6:150072400-150076200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:150072400-150076400	Weak transcription	Fetal Heart	heart
39	chr6:150072400-150076400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:150072400-150076800	Weak transcription	NHDF-Ad	bronchial
41	chr6:150072400-150080600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:150072400-150081000	Weak transcription	HSMM	muscle
43	chr6:150072400-150081000	Weak transcription	HSMMtube	muscle
44	chr6:150072400-150081000	Weak transcription	Osteobl	bone
45	chr6:150072400-150081400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:150072400-150086800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:150072400-150087200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:150072400-150104600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr6:150072400-150111400	Weak transcription	Colonic Mucosa	Colon
50	chr6:150072600-150080800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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