Variant report

Variant	rs9480114
Chromosome Location	chr6:150082890-150082891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150067420..150070496-chr6:150080742..150084975,5	MCF-7	breast:
2	chr6:150070911..150073145-chr6:150082041..150085083,3	MCF-7	breast:
3	chr6:150081562..150084167-chr6:150089539..150091246,2	K562	blood:
4	chr6:150080552..150082933-chr6:150085162..150087881,2	K562	blood:
5	chr6:150081430..150084615-chr6:150085196..150088409,5	K562	blood:
6	chr6:150071337..150080563-chr6:150080588..150087592,16	K562	blood:
7	chr6:150080535..150082998-chr6:150090034..150092678,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120253	Chromatin interaction
ENSG00000120265	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17087775	1.00[AMR][1000 genomes]
rs28692896	1.00[AMR][1000 genomes]
rs73781228	1.00[AMR][1000 genomes]
rs9478144	1.00[YRI][hapmap]
rs9478410	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9478822	1.00[YRI][hapmap]
rs9478948	1.00[YRI][hapmap]
rs9479096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9479409	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9479583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9479588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9479882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480479	0.81[AFR][1000 genomes]
rs9498377	1.00[AMR][1000 genomes]
rs9498386	1.00[AMR][1000 genomes]
rs9498388	1.00[AMR][1000 genomes]
rs9498389	1.00[AMR][1000 genomes]
rs9505828	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9505976	1.00[AMR][1000 genomes]
rs9505978	0.81[AFR][1000 genomes]
rs9505988	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9505990	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3345441	chr6:150082784-150085632	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150071800-150092600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:150071800-150092800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:150071800-150100200	Weak transcription	Gastric	stomach
4	chr6:150072000-150086800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:150072000-150087000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:150072000-150087200	Weak transcription	Stomach Mucosa	stomach
7	chr6:150072000-150094200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:150072000-150111000	Weak transcription	Fetal Kidney	kidney
9	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
10	chr6:150072200-150087000	Weak transcription	Fetal Lung	lung
11	chr6:150072200-150087200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:150072200-150087200	Weak transcription	Primary T cells from cord blood	blood
13	chr6:150072200-150087200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:150072200-150087200	Weak transcription	NH-A	brain
15	chr6:150072400-150086800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:150072400-150087200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:150072400-150104600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:150072400-150111400	Weak transcription	Colonic Mucosa	Colon
19	chr6:150072600-150087000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:150072600-150087200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:150072600-150087200	Weak transcription	NHEK	skin
22	chr6:150072800-150087200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:150073000-150086800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:150073000-150086800	Weak transcription	Fetal Brain Female	brain
25	chr6:150073000-150087200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:150073000-150094400	Weak transcription	Lung	lung
27	chr6:150073200-150087200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:150073200-150087200	Weak transcription	HUVEC	blood vessel
29	chr6:150073400-150083400	Weak transcription	Ovary	ovary
30	chr6:150073800-150086800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:150073800-150087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:150073800-150087200	Weak transcription	NHLF	lung
33	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
34	chr6:150074000-150087200	Weak transcription	Hela-S3	cervix
35	chr6:150074200-150101000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:150075800-150094800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:150077000-150085600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:150077000-150115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:150077200-150087200	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:150077200-150118400	Weak transcription	Pancreas	Pancrea
41	chr6:150077400-150084600	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:150077400-150086800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:150077400-150087200	Weak transcription	Brain Anterior Caudate	brain
44	chr6:150077400-150087200	Weak transcription	Brain Substantia Nigra	brain
45	chr6:150077400-150142400	Weak transcription	Fetal Heart	heart
46	chr6:150077600-150087200	Weak transcription	Brain Angular Gyrus	brain
47	chr6:150077800-150118400	Weak transcription	Psoas Muscle	Psoas
48	chr6:150078200-150092600	Weak transcription	Left Ventricle	heart
49	chr6:150078800-150086800	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:150079600-150083400	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links