Variant report

Variant	rs9498377
Chromosome Location	chr6:149921729-149921730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149920411..149922335-chr6:149967017..149968903,2	K562	blood:
2	chr6:149920411..149922335-chr6:149967017..149969347,3	K562	blood:
3	chr6:149921558..149923711-chr6:149928305..149931227,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17087775	1.00[AMR][1000 genomes]
rs28692896	1.00[AMR][1000 genomes]
rs6911686	1.00[AMR][1000 genomes]
rs6911796	1.00[AMR][1000 genomes]
rs73781228	1.00[AMR][1000 genomes]
rs9478410	1.00[AMR][1000 genomes]
rs9479096	1.00[AMR][1000 genomes]
rs9479409	1.00[AMR][1000 genomes]
rs9479583	1.00[AMR][1000 genomes]
rs9479588	1.00[AMR][1000 genomes]
rs9479882	1.00[AMR][1000 genomes]
rs9480114	1.00[AMR][1000 genomes]
rs9485398	1.00[AMR][1000 genomes]
rs9498386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498389	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9505828	1.00[AMR][1000 genomes]
rs9505976	1.00[AMR][1000 genomes]
rs9505988	1.00[AMR][1000 genomes]
rs9505990	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1794633	chr6:149903597-149944908	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149889000-149928000	Weak transcription	Stomach Mucosa	stomach
3	chr6:149889400-149924200	Weak transcription	Fetal Heart	heart
4	chr6:149889600-149931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:149893800-149926600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:149895600-149923200	Strong transcription	Dnd41	blood
7	chr6:149898600-149927400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:149899200-149929800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:149900200-149926800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:149900400-149923200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:149901000-149923200	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr6:149901000-149923200	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr6:149902800-149929000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:149903800-149924200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:149905200-149926200	Strong transcription	Fetal Stomach	stomach
16	chr6:149906800-149922800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:149907000-149925800	Strong transcription	Fetal Thymus	thymus
18	chr6:149907600-149925800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:149909000-149935000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:149910000-149935200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:149910800-149926000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:149911200-149925800	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:149911400-149925200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:149911400-149927400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:149912800-149925800	Strong transcription	Fetal Muscle Leg	muscle
26	chr6:149913200-149924400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr6:149914000-149923000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:149914200-149923200	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr6:149915200-149923800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:149915200-149935000	Weak transcription	Small Intestine	intestine
31	chr6:149915400-149924400	Weak transcription	Brain Angular Gyrus	brain
32	chr6:149915400-149926400	Weak transcription	Hela-S3	cervix
33	chr6:149915400-149929000	Weak transcription	Fetal Brain Male	brain
34	chr6:149915600-149922200	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:149915600-149935200	Weak transcription	Esophagus	oesophagus
36	chr6:149915600-149968400	Weak transcription	Pancreas	Pancrea
37	chr6:149915600-149969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:149915800-149922000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:149915800-149934800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:149915800-149969200	Weak transcription	Gastric	stomach
41	chr6:149916000-149935000	Weak transcription	Spleen	Spleen
42	chr6:149916000-149943000	Weak transcription	Colonic Mucosa	Colon
43	chr6:149916200-149921800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:149916400-149923200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr6:149916400-149934600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr6:149916400-149950200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:149916600-149922000	Weak transcription	NH-A	brain
48	chr6:149916800-149926000	Strong transcription	Fetal Lung	lung
49	chr6:149917400-149925800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:149917400-149925800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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