The 2.0 version of rSNPBase

Variant report

Variant rs56332721
Chromosome Location chr3:53132556-53132557
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53107600-53133600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr3:53107800-53134000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr3:53107800-53151400 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr3:53117800-53147200 Weak transcription Psoas Muscle Psoas
5 chr3:53118600-53135200 Weak transcription NH-A brain
6 chr3:53118800-53135200 Strong transcription Fetal Thymus thymus
7 chr3:53119000-53135000 Weak transcription K562 blood
8 chr3:53119000-53154200 Weak transcription Stomach Mucosa stomach
9 chr3:53119200-53133800 Strong transcription Fetal Stomach stomach
10 chr3:53119600-53136000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr3:53120400-53138600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr3:53120600-53134600 Strong transcription Primary T helper cells fromperipheralblood blood
13 chr3:53120800-53138400 Strong transcription Primary hematopoietic stem cells short term culture blood
14 chr3:53120800-53144400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr3:53121200-53134200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr3:53121400-53142600 Strong transcription Stomach Smooth Muscle stomach
17 chr3:53121800-53135400 Strong transcription Primary T cells from cord blood blood
18 chr3:53121800-53137800 Strong transcription Fetal Muscle Trunk muscle
19 chr3:53122200-53132800 Weak transcription HUVEC blood vessel
20 chr3:53122200-53133200 Weak transcription A549 lung
21 chr3:53122400-53136800 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr3:53122400-53143200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr3:53122800-53152200 Weak transcription Small Intestine intestine
24 chr3:53123000-53133000 Weak transcription Fetal Kidney kidney
25 chr3:53123200-53138800 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr3:53123200-53148600 Strong transcription Primary T cells fromperipheralblood blood
27 chr3:53123600-53136200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr3:53123800-53134600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr3:53124200-53151600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
30 chr3:53124400-53135200 Strong transcription Fetal Muscle Leg muscle
31 chr3:53124800-53139400 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr3:53125600-53136600 Weak transcription NHDF-Ad bronchial
33 chr3:53126400-53132800 Weak transcription Brain Angular Gyrus brain
34 chr3:53126600-53133000 Weak transcription H9 Cell Line embryonic stem cell
35 chr3:53126600-53133000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr3:53126600-53133200 Weak transcription H1 Cell Line embryonic stem cell
37 chr3:53126800-53135400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr3:53126800-53135600 Weak transcription iPS-18 Cell Line embryonic stem cell
39 chr3:53126800-53136200 Weak transcription iPS-20b Cell Line embryonic stem cell
40 chr3:53126800-53136200 Weak transcription Colonic Mucosa Colon
41 chr3:53127000-53133000 Weak transcription NHLF lung
42 chr3:53127000-53135400 Weak transcription HMEC breast
43 chr3:53127000-53136600 Weak transcription HSMMtube muscle
44 chr3:53127000-53154200 Weak transcription Right Atrium heart
45 chr3:53127200-53133000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr3:53127200-53133000 Weak transcription Brain Substantia Nigra brain
47 chr3:53127200-53135200 Strong transcription Fetal Adrenal Gland Adrenal Gland
48 chr3:53127400-53132600 Weak transcription Primary neutrophils fromperipheralblood blood
49 chr3:53127400-53144000 Weak transcription Fetal Heart heart
50 chr3:53127600-53133000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015