The 2.0 version of rSNPBase

Variant report

Variant rs56338250
Chromosome Location chr12:46190376-46190377
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:46132000-46205200 Weak transcription HSMM muscle
2 chr12:46149600-46215400 Weak transcription Fetal Kidney kidney
3 chr12:46157400-46199600 Weak transcription HepG2 liver
4 chr12:46164400-46193600 Weak transcription Fetal Stomach stomach
5 chr12:46164600-46193400 Weak transcription Primary hematopoietic stem cells blood
6 chr12:46164600-46205200 Weak transcription Dnd41 blood
7 chr12:46164600-46230000 Weak transcription Thymus Thymus
8 chr12:46164800-46193200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr12:46166800-46199800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr12:46167600-46205200 Weak transcription Duodenum Mucosa Duodenum
11 chr12:46168600-46193400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr12:46168800-46193600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr12:46169000-46197600 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr12:46169000-46202400 Weak transcription Aorta Aorta
15 chr12:46169000-46202400 Weak transcription Left Ventricle heart
16 chr12:46169000-46202400 Weak transcription Psoas Muscle Psoas
17 chr12:46169000-46205200 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr12:46169000-46208000 Weak transcription Brain Angular Gyrus brain
19 chr12:46169000-46215400 Weak transcription Fetal Lung lung
20 chr12:46170200-46193600 Weak transcription Fetal Intestine Small intestine
21 chr12:46174200-46205000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
22 chr12:46175200-46215400 Weak transcription Primary B cells from cord blood blood
23 chr12:46175600-46205200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr12:46175800-46205200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr12:46177400-46215000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr12:46177600-46205200 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr12:46177600-46243400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr12:46178200-46193800 Weak transcription Fetal Intestine Large intestine
29 chr12:46179400-46205200 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr12:46182000-46205200 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr12:46182600-46230600 Weak transcription Primary T killer naive cells fromperipheralblood blood
32 chr12:46183200-46193000 Weak transcription A549 lung
33 chr12:46183200-46193600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr12:46183200-46205200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr12:46183200-46205200 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr12:46183600-46197600 Weak transcription NHDF-Ad bronchial
37 chr12:46183800-46202400 Weak transcription Right Ventricle heart
38 chr12:46183800-46215400 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr12:46183800-46243400 Weak transcription Small Intestine intestine
40 chr12:46184400-46195400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
41 chr12:46184400-46197600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr12:46184600-46191400 Weak transcription Brain Substantia Nigra brain
43 chr12:46184600-46231200 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr12:46184800-46197800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
45 chr12:46185600-46195800 Weak transcription Ovary ovary
46 chr12:46185600-46196000 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr12:46185600-46205200 Weak transcription Primary T helper cells fromperipheralblood blood
48 chr12:46186000-46233400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr12:46186200-46201600 Weak transcription Colon Smooth Muscle Colon
50 chr12:46186200-46205200 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015