Variant report
| Variant | rs4522236 |
|---|---|
| Chromosome Location | chr12:45998624-45998625 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:45997654..45999944-chr12:46107305..46109370,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:47)
| rs_ID | r2[population] |
|---|---|
| rs10880858 | 1.00[EUR][1000 genomes] |
| rs11183020 | 1.00[EUR][1000 genomes] |
| rs11183108 | 1.00[EUR][1000 genomes] |
| rs11183109 | 1.00[EUR][1000 genomes] |
| rs11183135 | 1.00[EUR][1000 genomes] |
| rs11183136 | 1.00[EUR][1000 genomes] |
| rs11183137 | 1.00[AMR][1000 genomes] |
| rs11183197 | 1.00[EUR][1000 genomes] |
| rs11183199 | 1.00[EUR][1000 genomes] |
| rs11183202 | 1.00[EUR][1000 genomes] |
| rs12296933 | 1.00[EUR][1000 genomes] |
| rs12297214 | 1.00[EUR][1000 genomes] |
| rs12298597 | 1.00[EUR][1000 genomes] |
| rs12298823 | 1.00[EUR][1000 genomes] |
| rs12299652 | 1.00[EUR][1000 genomes] |
| rs12299715 | 1.00[EUR][1000 genomes] |
| rs12301665 | 1.00[EUR][1000 genomes] |
| rs12302862 | 1.00[EUR][1000 genomes] |
| rs12309988 | 1.00[EUR][1000 genomes] |
| rs12312478 | 1.00[EUR][1000 genomes] |
| rs12313957 | 1.00[EUR][1000 genomes] |
| rs12316100 | 1.00[EUR][1000 genomes] |
| rs12316726 | 1.00[EUR][1000 genomes] |
| rs12318053 | 1.00[EUR][1000 genomes] |
| rs12321106 | 1.00[EUR][1000 genomes] |
| rs28583490 | 1.00[EUR][1000 genomes] |
| rs55916269 | 1.00[EUR][1000 genomes] |
| rs56338250 | 1.00[EUR][1000 genomes] |
| rs58253063 | 1.00[EUR][1000 genomes] |
| rs59027429 | 1.00[EUR][1000 genomes] |
| rs59340060 | 1.00[EUR][1000 genomes] |
| rs6582560 | 1.00[EUR][1000 genomes] |
| rs7132585 | 1.00[EUR][1000 genomes] |
| rs7133123 | 1.00[EUR][1000 genomes] |
| rs7308856 | 1.00[EUR][1000 genomes] |
| rs7308893 | 1.00[EUR][1000 genomes] |
| rs7309921 | 1.00[EUR][1000 genomes] |
| rs7315365 | 1.00[EUR][1000 genomes] |
| rs74081382 | 1.00[EUR][1000 genomes] |
| rs74081384 | 1.00[EUR][1000 genomes] |
| rs74081401 | 1.00[EUR][1000 genomes] |
| rs74084208 | 1.00[EUR][1000 genomes] |
| rs7964495 | 1.00[EUR][1000 genomes] |
| rs7973967 | 1.00[EUR][1000 genomes] |
| rs7975170 | 1.00[EUR][1000 genomes] |
| rs7975408 | 1.00[EUR][1000 genomes] |
| rs7977711 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832395 | chr12:45841765-46039297 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2751099 | chr12:45960118-46043633 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:45993600-45999000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
