Variant report

Variant	rs12299652
Chromosome Location	chr12:45816671-45816672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:45815659..45817230-chr12:45827515..45830278,2	MCF-7	breast:
2	chr12:45809224..45812337-chr12:45815815..45818970,3	K562	blood:
3	chr12:45816584..45818439-chr12:45823232..45825090,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11182985	1.00[EUR][1000 genomes]
rs11183020	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11183108	1.00[EUR][1000 genomes]
rs11183109	1.00[EUR][1000 genomes]
rs11183135	1.00[EUR][1000 genomes]
rs11183136	1.00[EUR][1000 genomes]
rs12298597	1.00[EUR][1000 genomes]
rs12298823	0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299715	1.00[EUR][1000 genomes]
rs12303119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12312478	1.00[EUR][1000 genomes]
rs12313889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12313957	1.00[EUR][1000 genomes]
rs12316100	1.00[EUR][1000 genomes]
rs12318053	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318489	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319642	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4522236	1.00[EUR][1000 genomes]
rs59027429	1.00[EUR][1000 genomes]
rs6582560	1.00[EUR][1000 genomes]
rs7977711	1.00[EUR][1000 genomes]
rs9804810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9804811	1.00[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45759200-45822600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr12:45764400-45821000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
4	chr12:45783200-45818800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr12:45792600-45822600	Weak transcription	Colonic Mucosa	Colon
9	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr12:45794200-45823200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr12:45795200-45817800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
14	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
17	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
18	chr12:45797600-45819200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
20	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
21	chr12:45806000-45822400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr12:45806400-45825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr12:45806800-45817600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr12:45808600-45819800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr12:45809600-45819600	Weak transcription	Fetal Heart	heart
28	chr12:45809600-45823800	Weak transcription	Esophagus	oesophagus
29	chr12:45809600-45824800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr12:45809800-45817200	Strong transcription	A549	lung
32	chr12:45809800-45820200	Weak transcription	HSMMtube	muscle
33	chr12:45809800-45820400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr12:45809800-45824000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr12:45810600-45826000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr12:45810800-45821600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr12:45810800-45825400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr12:45811400-45819200	Weak transcription	Pancreas	Pancrea
39	chr12:45811600-45820200	Weak transcription	Gastric	stomach
40	chr12:45811600-45824400	Weak transcription	Right Ventricle	heart
41	chr12:45811600-45826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr12:45811800-45820200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr12:45812200-45818400	Weak transcription	HepG2	liver
45	chr12:45812200-45825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr12:45812200-45826600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr12:45812400-45820800	Weak transcription	NHLF	lung
48	chr12:45812600-45818800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr12:45812600-45820200	Weak transcription	Spleen	Spleen
50	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine

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