Variant report

Variant	rs11183020
Chromosome Location	chr12:45812464-45812465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45807394..45809963-chr12:45812427..45815813,3	K562	blood:
2	chr12:45723096..45724748-chr12:45811796..45814001,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11182985	1.00[EUR][1000 genomes]
rs11183108	1.00[EUR][1000 genomes]
rs11183109	1.00[EUR][1000 genomes]
rs11183135	1.00[EUR][1000 genomes]
rs11183136	1.00[EUR][1000 genomes]
rs12298597	1.00[EUR][1000 genomes]
rs12298823	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299652	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299715	1.00[EUR][1000 genomes]
rs12303119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12312478	1.00[EUR][1000 genomes]
rs12313889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12313957	1.00[EUR][1000 genomes]
rs12316100	1.00[EUR][1000 genomes]
rs12318053	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318489	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319642	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4522236	1.00[EUR][1000 genomes]
rs59027429	1.00[EUR][1000 genomes]
rs6582560	1.00[EUR][1000 genomes]
rs7977711	1.00[EUR][1000 genomes]
rs9804810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9804811	1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45759200-45822600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr12:45764400-45821000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:45764600-45815400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:45772600-45815400	Weak transcription	K562	blood
5	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
6	chr12:45783200-45818800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr12:45792600-45822600	Weak transcription	Colonic Mucosa	Colon
11	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr12:45794200-45823200	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr12:45795200-45813200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:45795200-45817800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr12:45795400-45813400	Strong transcription	Dnd41	blood
17	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
18	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
21	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
22	chr12:45797600-45819200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr12:45800800-45813000	Strong transcription	Primary T cells from cord blood	blood
24	chr12:45801600-45813000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr12:45801800-45812600	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr12:45802000-45812800	Strong transcription	Fetal Lung	lung
27	chr12:45802200-45812800	Strong transcription	Primary B cells from cord blood	blood
28	chr12:45802600-45814000	Weak transcription	Stomach Mucosa	stomach
29	chr12:45804200-45812600	Strong transcription	Fetal Muscle Leg	muscle
30	chr12:45804200-45813000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
32	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
33	chr12:45805600-45812600	Strong transcription	Thymus	Thymus
34	chr12:45806000-45822400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr12:45806400-45825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr12:45806800-45816200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr12:45806800-45817600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr12:45807000-45815400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr12:45807200-45815000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr12:45808600-45812800	Strong transcription	Primary hematopoietic stem cells	blood
43	chr12:45808600-45819800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:45809000-45812600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr12:45809000-45812600	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr12:45809000-45812600	Strong transcription	Placenta	Placenta
47	chr12:45809000-45812800	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr12:45809000-45813000	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr12:45809200-45812600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr12:45809200-45812600	Strong transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links