Variant report

Variant	rs56338720
Chromosome Location	chr15:93172480-93172481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93171890..93174329-chr15:93176505..93178295,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56162818	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56265399	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56283558	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56401526	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57362979	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58674842	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60265253	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72756106	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72756107	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv974717	chr15:93170490-93180185	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93151600-93178000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:93160200-93172800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:93161200-93173000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:93161400-93178000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:93161800-93172600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:93163600-93180600	Weak transcription	Small Intestine	intestine
7	chr15:93167000-93177400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:93167600-93176400	Weak transcription	Fetal Heart	heart
9	chr15:93167800-93178200	Weak transcription	Colonic Mucosa	Colon
10	chr15:93167800-93179800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:93168200-93173000	Weak transcription	Esophagus	oesophagus
12	chr15:93168200-93175200	Weak transcription	Aorta	Aorta
13	chr15:93168200-93178000	Weak transcription	Fetal Brain Male	brain
14	chr15:93168200-93178000	Weak transcription	Lung	lung
15	chr15:93168200-93179800	Weak transcription	Spleen	Spleen
16	chr15:93168200-93180200	Weak transcription	Psoas Muscle	Psoas
17	chr15:93168400-93179200	Weak transcription	Adipose Nuclei	Adipose
18	chr15:93168600-93172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:93168600-93172800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:93168600-93173000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:93168800-93173200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr15:93168800-93173400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:93168800-93174600	Weak transcription	Fetal Brain Female	brain
24	chr15:93168800-93175000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:93168800-93177400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr15:93168800-93177600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:93169000-93173000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:93169000-93180400	Weak transcription	Fetal Kidney	kidney
29	chr15:93169200-93172600	Weak transcription	Brain Substantia Nigra	brain
30	chr15:93169200-93173000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:93169200-93176000	Weak transcription	Right Atrium	heart
32	chr15:93169200-93176000	Weak transcription	Right Ventricle	heart
33	chr15:93169200-93177800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr15:93169200-93178000	Weak transcription	Brain Anterior Caudate	brain
35	chr15:93169200-93178400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:93169200-93179200	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:93169200-93180200	Weak transcription	A549	lung
38	chr15:93169400-93173200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:93169800-93173800	Strong transcription	Fetal Stomach	stomach
40	chr15:93170000-93172600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:93170000-93177000	Weak transcription	HSMMtube	muscle
42	chr15:93170000-93180400	Weak transcription	HSMM	muscle
43	chr15:93170200-93173400	Strong transcription	Fetal Muscle Leg	muscle
44	chr15:93170200-93173600	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr15:93170200-93173800	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:93170400-93172800	Weak transcription	HUVEC	blood vessel
47	chr15:93170400-93173600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr15:93170400-93173600	Strong transcription	Gastric	stomach
49	chr15:93170400-93173800	Strong transcription	Fetal Intestine Large	intestine
50	chr15:93170400-93173800	ZNF genes & repeats	GM12878-XiMat	blood

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