Variant report

Variant	rs56338822
Chromosome Location	chr5:119817041-119817042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11954044	1.00[ASN][1000 genomes]
rs1432459	0.85[AMR][1000 genomes]
rs17146484	1.00[AMR][1000 genomes]
rs17146502	0.85[AMR][1000 genomes]
rs17146514	1.00[AMR][1000 genomes]
rs17146517	0.85[AMR][1000 genomes]
rs17146550	0.85[AMR][1000 genomes]
rs17146582	0.85[AMR][1000 genomes]
rs56035556	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56156405	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57393373	1.00[AFR][1000 genomes]
rs57526008	0.85[AMR][1000 genomes]
rs58047924	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60146521	0.85[AMR][1000 genomes]
rs61629516	0.85[AMR][1000 genomes]
rs6595226	0.85[AMR][1000 genomes]
rs6595227	0.85[AMR][1000 genomes]
rs6861613	0.85[AMR][1000 genomes]
rs6882697	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6898093	0.85[AMR][1000 genomes]
rs6898472	0.85[AMR][1000 genomes]
rs73782016	1.00[AMR][1000 genomes]
rs73784904	0.85[AMR][1000 genomes]
rs73784905	0.85[AMR][1000 genomes]
rs73786232	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7736729	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119808600-119835800	Weak transcription	HSMM	muscle
2	chr5:119812000-119826800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:119812200-119840000	Weak transcription	Fetal Lung	lung
4	chr5:119815200-119817800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:119816200-119819600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:119816400-119835400	Weak transcription	Osteobl	bone
7	chr5:119816600-119843000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:119816800-119818000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:119817000-119818600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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