Variant report

Variant	rs6898472
Chromosome Location	chr5:119681999-119682000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1432459	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17146484	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146502	0.96[AFR][1000 genomes]
rs17146514	0.85[AMR][1000 genomes]
rs17146517	0.84[AFR][1000 genomes]
rs17146550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56338822	0.85[AMR][1000 genomes]
rs57526008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60146521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61629516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6595226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6595227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6861613	0.94[AFR][1000 genomes]
rs6898093	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782016	0.85[AMR][1000 genomes]
rs73784904	0.96[AFR][1000 genomes]
rs73784905	0.96[AFR][1000 genomes]
rs7736729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882786	chr5:119615110-119714817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119680400-119686400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:119681600-119682000	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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