Variant report

Variant	rs563399210
Chromosome Location	chr10:89629919-89629920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89628331..89631690-chr10:89632886..89636887,5	MCF-7	breast:
2	chr10:89629893..89635065-chr10:89636010..89640351,6	K562	blood:
3	chr10:89627960..89634049-chr10:89634179..89640530,8	K562	blood:
4	chr10:89619679..89625889-chr10:89627245..89632129,8	K562	blood:
5	chr10:89628472..89630169-chr10:89642973..89645444,2	K562	blood:
6	chr10:89619679..89625045-chr10:89627844..89633340,9	K562	blood:

Variant related genes	Relation type
ENSG00000224745	Chromatin interaction
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041392	chr10:89615125-89632510	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1044700	chr10:89615125-89641293	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv1793643	chr10:89625582-89645473	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv1035278	chr10:89629273-89641293	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89621200-89630800	Active TSS	Aorta	Aorta
2	chr10:89621800-89630000	Active TSS	Stomach Smooth Muscle	stomach
3	chr10:89621800-89630600	Active TSS	NHLF	lung
4	chr10:89621800-89632400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:89621800-89632400	Active TSS	GM12878-XiMat	blood
6	chr10:89624200-89631800	Transcr. at gene 5' and 3'	Dnd41	blood
7	chr10:89624400-89646400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:89624800-89631200	Weak transcription	Spleen	Spleen
9	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:89625800-89632400	Weak transcription	Small Intestine	intestine
11	chr10:89627200-89630600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:89627200-89645800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:89627400-89630000	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr10:89627400-89630800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:89627400-89631600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:89627400-89638200	Weak transcription	Placenta	Placenta
17	chr10:89627600-89645600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:89628000-89635200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:89628200-89635800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:89628200-89646200	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:89628200-89646600	Weak transcription	Colonic Mucosa	Colon
22	chr10:89628400-89633800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:89628400-89637800	Weak transcription	Fetal Intestine Small	intestine
24	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:89628600-89630000	Enhancers	NH-A	brain
26	chr10:89628600-89630600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:89628600-89630800	Weak transcription	Brain Substantia Nigra	brain
28	chr10:89628600-89631200	Enhancers	Colon Smooth Muscle	Colon
29	chr10:89628600-89631200	Enhancers	HepG2	liver
30	chr10:89628600-89631400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr10:89628600-89631400	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr10:89628600-89631800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:89628600-89632400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:89628600-89632800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:89628600-89632800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:89628600-89633600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr10:89628600-89635000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:89628600-89636400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr10:89628600-89638200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:89628600-89645800	Weak transcription	HSMMtube	muscle
41	chr10:89628800-89630400	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr10:89628800-89630400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr10:89628800-89630600	Enhancers	Fetal Intestine Large	intestine
44	chr10:89628800-89630600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:89628800-89630800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:89628800-89631000	Enhancers	Brain Angular Gyrus	brain
47	chr10:89628800-89631200	Enhancers	Brain Anterior Caudate	brain
48	chr10:89628800-89631400	Enhancers	Liver	Liver
49	chr10:89628800-89631800	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr10:89628800-89633200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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