Variant report

Variant	rs56341863
Chromosome Location	chr8:107469509-107469510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10099574	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103650	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10108067	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11987941	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11989724	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1453210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1453211	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16874660	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16874662	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1901776	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2022967	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28392768	1.00[AMR][1000 genomes]
rs4626571	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56051148	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7008540	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7018152	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7814744	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7832133	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838147	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107457000-107470400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107466000-107487000	Weak transcription	Aorta	Aorta
3	chr8:107467000-107469600	Enhancers	HUVEC	blood vessel
4	chr8:107467400-107473800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:107467600-107469600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:107468600-107471400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:107468600-107471800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:107468600-107477800	Weak transcription	NHDF-Ad	bronchial
9	chr8:107469000-107471600	Weak transcription	NHEK	skin
10	chr8:107469200-107473800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:107469400-107472000	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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