Variant report

Variant	rs10103650
Chromosome Location	chr8:107456100-107456101
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10087886	0.85[AFR][1000 genomes]
rs10092860	0.91[AFR][1000 genomes]
rs10095161	0.81[AFR][1000 genomes]
rs10099574	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10100064	0.85[AFR][1000 genomes]
rs10102666	0.91[AFR][1000 genomes]
rs10108067	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10216339	0.89[AFR][1000 genomes]
rs10216769	0.86[AFR][1000 genomes]
rs10955422	0.85[AFR][1000 genomes]
rs10955424	0.91[AFR][1000 genomes]
rs11987941	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11989724	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11994811	0.89[AFR][1000 genomes]
rs11995544	0.87[AFR][1000 genomes]
rs11998575	0.91[AFR][1000 genomes]
rs12547857	0.90[AFR][1000 genomes]
rs13270670	0.90[AFR][1000 genomes]
rs13279066	0.85[AFR][1000 genomes]
rs13279442	0.90[AFR][1000 genomes]
rs1453210	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1453211	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1453217	0.91[AFR][1000 genomes]
rs1453218	0.86[AFR][1000 genomes]
rs16874615	0.83[AFR][1000 genomes]
rs16874617	0.91[AFR][1000 genomes]
rs16874643	0.91[AFR][1000 genomes]
rs16874645	0.87[AFR][1000 genomes]
rs16874660	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16874662	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1901776	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2022967	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2123542	0.90[AFR][1000 genomes]
rs2123543	0.90[AFR][1000 genomes]
rs2167798	0.90[AFR][1000 genomes]
rs2167800	0.91[AFR][1000 genomes]
rs28373035	0.90[AFR][1000 genomes]
rs28392768	0.91[AMR][1000 genomes]
rs28523747	0.90[AFR][1000 genomes]
rs28551523	0.90[AFR][1000 genomes]
rs28562014	0.91[AFR][1000 genomes]
rs28620840	0.90[AFR][1000 genomes]
rs28651376	0.91[AFR][1000 genomes]
rs28657963	0.83[AFR][1000 genomes]
rs4436099	0.91[AFR][1000 genomes]
rs4437620	0.87[AFR][1000 genomes]
rs4626571	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs56051148	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs56341863	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6469071	0.90[AFR][1000 genomes]
rs7004959	0.85[AFR][1000 genomes]
rs7008540	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7009264	0.91[AFR][1000 genomes]
rs7018152	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs731156	0.90[AFR][1000 genomes]
rs7812434	0.91[AFR][1000 genomes]
rs7814744	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7828143	0.87[AFR][1000 genomes]
rs7828149	0.91[AFR][1000 genomes]
rs7828307	0.91[AFR][1000 genomes]
rs7828387	0.91[AFR][1000 genomes]
rs7832133	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7838147	0.91[AMR][1000 genomes]
rs7842445	0.90[AFR][1000 genomes]
rs7845625	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107452000-107465200	Weak transcription	Aorta	Aorta
2	chr8:107455200-107456200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:107455400-107456400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:107456000-107457400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links