Variant report

Variant	rs28562014
Chromosome Location	chr8:107447286-107447287
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10087886	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10092860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095161	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099574	0.82[AFR][1000 genomes]
rs10100064	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10100381	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10102666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103650	0.91[AFR][1000 genomes]
rs10108020	0.88[EUR][1000 genomes]
rs10108067	0.91[AFR][1000 genomes]
rs10110262	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110475	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10113324	0.94[EUR][1000 genomes]
rs10216339	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955423	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987502	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11987941	0.91[AFR][1000 genomes]
rs11989724	0.84[AFR][1000 genomes]
rs11994811	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11995544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541594	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12541695	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12545724	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546608	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12547275	0.81[EUR][1000 genomes]
rs12547857	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548093	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12548876	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12549912	0.90[EUR][1000 genomes]
rs13259827	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13270670	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273085	0.97[EUR][1000 genomes]
rs13279066	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279442	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13280788	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13439057	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13439754	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13439885	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1453209	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1453210	0.83[AFR][1000 genomes]
rs1453217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453218	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874595	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874619	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874660	0.88[AFR][1000 genomes]
rs16874662	0.85[AFR][1000 genomes]
rs16874728	0.94[EUR][1000 genomes]
rs16874737	0.91[EUR][1000 genomes]
rs17338818	0.95[EUR][1000 genomes]
rs17340319	0.94[EUR][1000 genomes]
rs1901776	0.91[AFR][1000 genomes]
rs2022967	0.82[AFR][1000 genomes]
rs2022968	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2022969	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123542	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123543	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167798	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28373035	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28453794	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28483597	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28512490	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28523747	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28551523	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28620840	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28651376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28657963	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28706457	0.90[EUR][1000 genomes]
rs28752069	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33952031	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34176736	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35201405	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35353842	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35861705	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35883258	0.96[EUR][1000 genomes]
rs4436099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4437620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4626571	0.83[AFR][1000 genomes]
rs56051148	0.83[AFR][1000 genomes]
rs57436256	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469065	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469066	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469067	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469071	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985905	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6985930	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6991668	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7004959	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008540	0.82[AFR][1000 genomes]
rs7009264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018152	0.83[AFR][1000 genomes]
rs731156	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814744	0.83[AFR][1000 genomes]
rs7817463	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7817974	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7823469	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7828143	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7828149	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7828307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828387	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7832133	0.91[AFR][1000 genomes]
rs7833506	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838526	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842445	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843251	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297382	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107444800-107451400	Weak transcription	Aorta	Aorta
2	chr8:107446400-107447400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr8:107446400-107447400	Enhancers	NH-A	brain
4	chr8:107446400-107447400	Enhancers	Osteobl	bone
5	chr8:107446400-107447600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:107446800-107447400	Enhancers	Fetal Heart	heart
7	chr8:107446800-107447800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:107446800-107450200	Enhancers	Primary T cells from cord blood	blood
9	chr8:107447000-107447400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:107447000-107447400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr8:107447000-107447600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:107447000-107447600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr8:107447000-107447600	Enhancers	Stomach Mucosa	stomach
14	chr8:107447000-107447800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr8:107447000-107447800	Enhancers	Fetal Thymus	thymus
16	chr8:107447000-107447800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr8:107447000-107447800	Flanking Active TSS	HUVEC	blood vessel
18	chr8:107447000-107448400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr8:107447000-107451400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:107447200-107447400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:107447200-107447400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr8:107447200-107447400	Bivalent Enhancer	Small Intestine	intestine
23	chr8:107447200-107447600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:107447200-107447600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr8:107447200-107447600	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr8:107447200-107447600	Enhancers	Esophagus	oesophagus
27	chr8:107447200-107447600	Enhancers	Gastric	stomach
28	chr8:107447200-107447600	Enhancers	Left Ventricle	heart
29	chr8:107447200-107447600	Enhancers	Lung	lung
30	chr8:107447200-107447600	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr8:107447200-107447600	Enhancers	Right Atrium	heart
32	chr8:107447200-107447600	Flanking Active TSS	Thymus	Thymus
33	chr8:107447200-107447600	Enhancers	Spleen	Spleen
34	chr8:107447200-107447800	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr8:107447200-107447800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:107447200-107447800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:107447200-107447800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:107447200-107447800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr8:107447200-107449000	Enhancers	Primary hematopoietic stem cells	blood

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