Variant report

Variant	rs7823469
Chromosome Location	chr8:107478766-107478767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107473925..107475852-chr8:107477064..107479538,2	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10087886	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10092860	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10095161	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10100064	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10102666	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10110262	0.81[EUR][1000 genomes]
rs10113324	0.81[EUR][1000 genomes]
rs10216339	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10216769	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10955422	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10955423	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10955424	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11987502	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11994811	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11995544	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11998575	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12541594	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12541695	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12545724	0.81[EUR][1000 genomes]
rs12546608	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12547275	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12547857	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12548093	0.81[EUR][1000 genomes]
rs12548876	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13259827	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13270670	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13273085	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13279066	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13279442	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13280788	0.80[AMR][1000 genomes]
rs13439057	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13439754	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13439885	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1453209	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1453217	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1453218	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16874595	0.81[EUR][1000 genomes]
rs16874615	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16874617	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16874619	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16874643	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16874645	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16874728	0.81[EUR][1000 genomes]
rs17338818	0.83[EUR][1000 genomes]
rs17340319	0.81[EUR][1000 genomes]
rs2022968	0.81[EUR][1000 genomes]
rs2022969	0.81[EUR][1000 genomes]
rs2123542	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2123543	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2167798	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2167800	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2444312	0.96[ASN][1000 genomes]
rs28373035	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28483597	0.81[EUR][1000 genomes]
rs28512490	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28523747	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28551523	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28562014	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28620840	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28651376	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28657963	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28752069	0.83[EUR][1000 genomes]
rs33952031	0.83[EUR][1000 genomes]
rs34176736	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35201405	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35353842	0.81[EUR][1000 genomes]
rs35861705	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35883258	0.84[EUR][1000 genomes]
rs4436099	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4437620	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57436256	0.83[EUR][1000 genomes]
rs6469065	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6469066	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6469067	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6469071	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6985905	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6985930	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6991668	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7004959	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7009264	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs731156	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7812434	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7817463	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7817974	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828143	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7828149	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7828307	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7828387	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7833506	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7838526	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7842445	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7843251	0.81[EUR][1000 genomes]
rs7845625	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9297382	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv824701	chr8:107378298-107520063	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611844	chr8:107440038-107494918	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107466000-107487000	Weak transcription	Aorta	Aorta
2	chr8:107474600-107480600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107475400-107511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:107478200-107495000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links