Variant report

Variant	rs563434857
Chromosome Location	chr11:45414428-45414429
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv306	chr11:45414044-45444431	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45405400-45434800	Weak transcription	Right Atrium	heart
2	chr11:45407000-45421000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:45411200-45417000	Enhancers	Liver	Liver
4	chr11:45412200-45415400	Bivalent Enhancer	Fetal Stomach	stomach
5	chr11:45412200-45417600	Weak transcription	Fetal Brain Female	brain
6	chr11:45412600-45415200	Enhancers	Fetal Lung	lung
7	chr11:45412600-45420400	Weak transcription	Gastric	stomach
8	chr11:45413000-45414800	Weak transcription	Brain Germinal Matrix	brain
9	chr11:45413600-45420200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:45413800-45414600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
11	chr11:45413800-45414600	Weak transcription	Ovary	ovary
12	chr11:45413800-45415200	Enhancers	HepG2	liver
13	chr11:45413800-45415400	Weak transcription	Lung	lung
14	chr11:45413800-45417000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:45414000-45415200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:45414400-45414600	Enhancers	Fetal Brain Male	brain
17	chr11:45414400-45415600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links