Variant report

Variant	rs563517
Chromosome Location	chr9:84532814-84532815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM75D1-5	chr9:84530307-84534842	NR_026851

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv508555	chr9:84507699-84580028	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1820579	chr9:84518394-84556369	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1849322	chr9:84518394-84564267	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1800180	chr9:84519751-84557638	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv17765	chr9:84527569-84566607	Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1849425	chr9:84530608-84564471	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1844930	chr9:84530608-84566456	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv1848158	chr9:84530808-84547039	Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1849238	chr9:84530808-84569326	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv8536	chr9:84531004-84564299	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv1797769	chr9:84531600-84563570	Inactive region	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv1798623	chr9:84531600-84564471	Inactive region	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv2193928	chr9:84531773-84547060	Inactive region	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv1843776	chr9:84531800-84545408	Inactive region	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv1797710	chr9:84531800-84546589	Inactive region	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv1795281	chr9:84531800-84562801	Inactive region	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv1800459	chr9:84531800-84564271	Inactive region	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv972763	chr9:84532014-84533110	Inactive region	lncRNA	n/a	inside rSNPs	diseases
20	esv1802939	chr9:84532252-84562125	Inactive region	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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