Variant report

Variant	rs56352502
Chromosome Location	chr1:76580518-76580519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56077995	1.00[AMR][1000 genomes]
rs56160304	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56309855	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59073776	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60246438	1.00[AMR][1000 genomes]
rs61217794	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691913	1.00[AMR][1000 genomes]
rs6702596	1.00[AMR][1000 genomes]
rs72990771	1.00[AMR][1000 genomes]
rs72992611	1.00[AMR][1000 genomes]
rs74090098	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74092509	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7515337	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871862	chr1:76525783-76598209	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518927	chr1:76573614-76586272	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv522056	chr1:76573614-76598209	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76557400-76605800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:76557600-76588800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:76575400-76606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:76576000-76583200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:76576400-76587000	Weak transcription	Left Ventricle	heart
6	chr1:76576400-76591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
8	chr1:76576800-76580600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:76576800-76580800	Weak transcription	Brain Anterior Caudate	brain
10	chr1:76577000-76590800	Weak transcription	Brain Substantia Nigra	brain
11	chr1:76579400-76590800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:76579800-76590800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links