Variant report

Variant	rs72990771
Chromosome Location	chr1:76560834-76560835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76559480..76561053-chr1:76563523..76565127,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10127768	1.00[EUR][1000 genomes]
rs1021463	1.00[EUR][1000 genomes]
rs10493581	1.00[EUR][1000 genomes]
rs10747330	1.00[EUR][1000 genomes]
rs10873786	1.00[EUR][1000 genomes]
rs12401785	1.00[EUR][1000 genomes]
rs1251499	1.00[EUR][1000 genomes]
rs1251532	1.00[EUR][1000 genomes]
rs1251538	1.00[EUR][1000 genomes]
rs1251554	1.00[EUR][1000 genomes]
rs1251559	1.00[EUR][1000 genomes]
rs1251563	1.00[EUR][1000 genomes]
rs1251589	1.00[EUR][1000 genomes]
rs1251590	1.00[EUR][1000 genomes]
rs1251592	1.00[EUR][1000 genomes]
rs1251593	1.00[EUR][1000 genomes]
rs1469988	1.00[EUR][1000 genomes]
rs1616175	1.00[EUR][1000 genomes]
rs1658743	1.00[EUR][1000 genomes]
rs17098016	1.00[EUR][1000 genomes]
rs17098027	1.00[EUR][1000 genomes]
rs17098034	1.00[EUR][1000 genomes]
rs17098071	1.00[EUR][1000 genomes]
rs1770884	1.00[EUR][1000 genomes]
rs1796809	1.00[EUR][1000 genomes]
rs28675110	1.00[EUR][1000 genomes]
rs56077995	1.00[AMR][1000 genomes]
rs56160304	1.00[AMR][1000 genomes]
rs56309855	1.00[AMR][1000 genomes]
rs56352502	1.00[AMR][1000 genomes]
rs59073776	1.00[AMR][1000 genomes]
rs60246438	1.00[AMR][1000 genomes]
rs60471485	1.00[EUR][1000 genomes]
rs60815815	1.00[EUR][1000 genomes]
rs61217794	1.00[AMR][1000 genomes]
rs6691913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6702596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72988548	1.00[EUR][1000 genomes]
rs72988551	1.00[EUR][1000 genomes]
rs72992611	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090098	1.00[AMR][1000 genomes]
rs74092509	1.00[AMR][1000 genomes]
rs7515337	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs946982	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871862	chr1:76525783-76598209	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76542800-76572000	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76548000-76561800	Weak transcription	Fetal Brain Female	brain
3	chr1:76548400-76576200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:76556800-76561400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:76557000-76561400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:76557400-76561600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:76557400-76561600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:76557400-76605800	Weak transcription	Fetal Intestine Small	intestine
9	chr1:76557600-76561400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:76557600-76561400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:76557600-76588800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:76558400-76562000	Enhancers	Brain Substantia Nigra	brain
13	chr1:76559000-76562000	Enhancers	Brain Cingulate Gyrus	brain
14	chr1:76559600-76562200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:76559600-76566800	Weak transcription	Fetal Lung	lung
16	chr1:76560000-76561000	Weak transcription	Fetal Kidney	kidney
17	chr1:76560000-76561200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:76560000-76561600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:76560000-76571000	Weak transcription	Brain Hippocampus Middle	brain
20	chr1:76560200-76573400	Weak transcription	Brain Angular Gyrus	brain
21	chr1:76560600-76561200	Weak transcription	Brain Anterior Caudate	brain
22	chr1:76560800-76561400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:76560800-76562400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links