Variant report
Variant | rs1251590 |
---|---|
Chromosome Location | chr1:76420071-76420072 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10127768 | 1.00[EUR][1000 genomes] |
rs1021463 | 1.00[EUR][1000 genomes] |
rs10493581 | 1.00[EUR][1000 genomes] |
rs10747330 | 0.94[YRI][hapmap];1.00[EUR][1000 genomes] |
rs10873726 | 1.00[EUR][1000 genomes] |
rs10873786 | 1.00[EUR][1000 genomes] |
rs11161785 | 0.93[YRI][hapmap];1.00[EUR][1000 genomes] |
rs11161801 | 1.00[EUR][1000 genomes] |
rs1144330 | 1.00[EUR][1000 genomes] |
rs1144332 | 0.94[YRI][hapmap];1.00[EUR][1000 genomes] |
rs1144335 | 1.00[EUR][1000 genomes] |
rs1146578 | 1.00[EUR][1000 genomes] |
rs1146585 | 1.00[EUR][1000 genomes] |
rs1146586 | 1.00[EUR][1000 genomes] |
rs1146589 | 1.00[EUR][1000 genomes] |
rs1146595 | 1.00[EUR][1000 genomes] |
rs1146596 | 1.00[EUR][1000 genomes] |
rs1146597 | 1.00[EUR][1000 genomes] |
rs1146599 | 1.00[EUR][1000 genomes] |
rs1146600 | 1.00[EUR][1000 genomes] |
rs1146601 | 1.00[EUR][1000 genomes] |
rs1146604 | 1.00[EUR][1000 genomes] |
rs1146621 | 1.00[EUR][1000 genomes] |
rs1146633 | 0.93[YRI][hapmap];1.00[EUR][1000 genomes] |
rs1146640 | 1.00[EUR][1000 genomes] |
rs12401785 | 1.00[EUR][1000 genomes] |
rs1251271 | 1.00[EUR][1000 genomes] |
rs1251499 | 1.00[EUR][1000 genomes] |
rs1251532 | 1.00[EUR][1000 genomes] |
rs1251538 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1251554 | 1.00[EUR][1000 genomes] |
rs1251559 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1251563 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1251589 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1251592 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1251593 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs1469988 | 0.82[YRI][hapmap];1.00[EUR][1000 genomes] |
rs1565718 | 0.86[YRI][hapmap];1.00[EUR][1000 genomes] |
rs1565719 | 0.93[YRI][hapmap];1.00[EUR][1000 genomes] |
rs1616175 | 1.00[EUR][1000 genomes] |
rs1658743 | 0.86[YRI][hapmap];1.00[EUR][1000 genomes] |
rs1658745 | 0.81[YRI][hapmap] |
rs1658748 | 0.81[AFR][1000 genomes] |
rs1694408 | 1.00[EUR][1000 genomes] |
rs1694423 | 1.00[EUR][1000 genomes] |
rs17098016 | 1.00[EUR][1000 genomes] |
rs17098027 | 1.00[EUR][1000 genomes] |
rs17098034 | 1.00[EUR][1000 genomes] |
rs17098071 | 1.00[EUR][1000 genomes] |
rs1770514 | 1.00[EUR][1000 genomes] |
rs1770884 | 1.00[EUR][1000 genomes] |
rs1770886 | 0.93[YRI][hapmap] |
rs1770891 | 0.82[YRI][hapmap] |
rs1796809 | 1.00[EUR][1000 genomes] |
rs1796811 | 0.93[YRI][hapmap] |
rs2347963 | 0.81[YRI][hapmap];1.00[EUR][1000 genomes] |
rs28675110 | 1.00[EUR][1000 genomes] |
rs3819949 | 0.86[YRI][hapmap] |
rs5745532 | 0.87[YRI][hapmap] |
rs60471485 | 1.00[EUR][1000 genomes] |
rs6691913 | 1.00[EUR][1000 genomes] |
rs6702596 | 1.00[EUR][1000 genomes] |
rs72988548 | 1.00[EUR][1000 genomes] |
rs72988551 | 1.00[EUR][1000 genomes] |
rs72990771 | 1.00[EUR][1000 genomes] |
rs72992611 | 1.00[EUR][1000 genomes] |
rs7515337 | 1.00[EUR][1000 genomes] |
rs7541791 | 1.00[EUR][1000 genomes] |
rs946982 | 1.00[EUR][1000 genomes] |
rs995972 | 0.94[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014072 | chr1:76200531-76460726 | Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
2 | nsv535005 | chr1:76200531-76460726 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
3 | nsv998499 | chr1:76361784-76598712 | Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:76415800-76420400 | Weak transcription | Brain Anterior Caudate | brain |
2 | chr1:76419000-76420800 | Enhancers | A549 | lung |
3 | chr1:76419000-76421000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
4 | chr1:76419200-76420800 | Enhancers | HepG2 | liver |
5 | chr1:76419200-76421000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
6 | chr1:76419800-76421000 | Enhancers | HMEC | breast |
7 | chr1:76420000-76420800 | Enhancers | NHEK | skin |
8 | chr1:76420000-76421000 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |