Variant report

Variant	rs1658748
Chromosome Location	chr1:76403493-76403494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1021463	0.88[AFR][1000 genomes]
rs10747330	0.88[AFR][1000 genomes]
rs10873786	0.85[AFR][1000 genomes]
rs1144330	0.82[AFR][1000 genomes]
rs1144332	0.82[AFR][1000 genomes]
rs1251271	0.85[AFR][1000 genomes]
rs1251589	0.81[AFR][1000 genomes]
rs1251590	0.81[AFR][1000 genomes]
rs1251592	0.81[AFR][1000 genomes]
rs1469988	0.87[AFR][1000 genomes]
rs1565718	0.82[AFR][1000 genomes]
rs1616175	0.86[AFR][1000 genomes]
rs1658743	0.87[AFR][1000 genomes]
rs1770884	0.88[AFR][1000 genomes]
rs1770891	0.87[AFR][1000 genomes]
rs1796797	0.88[AFR][1000 genomes]
rs1796809	0.88[AFR][1000 genomes]
rs1873895	0.85[AFR][1000 genomes]
rs2788041	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1004669	chr1:76301198-76409451	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76402800-76403600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr1:76402800-76420000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links