Variant report

Variant	rs1873895
Chromosome Location	chr1:76404749-76404750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1021463	1.00[AMR][1000 genomes]
rs10747330	1.00[AMR][1000 genomes]
rs10873786	1.00[AMR][1000 genomes]
rs11161785	1.00[AMR][1000 genomes]
rs11161801	1.00[AMR][1000 genomes]
rs1144330	1.00[AMR][1000 genomes]
rs1144332	1.00[AMR][1000 genomes]
rs1146575	1.00[AMR][1000 genomes]
rs1146576	1.00[AMR][1000 genomes]
rs1146578	1.00[AMR][1000 genomes]
rs1146586	1.00[AMR][1000 genomes]
rs1146604	1.00[AMR][1000 genomes]
rs1146633	1.00[AMR][1000 genomes]
rs1146640	1.00[AMR][1000 genomes]
rs1251271	1.00[AMR][1000 genomes]
rs1251585	1.00[AMR][1000 genomes]
rs1469988	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1565718	1.00[AMR][1000 genomes]
rs1565719	1.00[AMR][1000 genomes]
rs1616175	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1658743	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1658748	0.85[AFR][1000 genomes]
rs1694408	1.00[AMR][1000 genomes]
rs1770514	1.00[AMR][1000 genomes]
rs1770884	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1770891	0.94[AFR][1000 genomes]
rs1796797	0.96[AFR][1000 genomes]
rs1796809	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2347963	1.00[AMR][1000 genomes]
rs2788041	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1004669	chr1:76301198-76409451	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76402800-76420000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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