Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1021463	0.80[AFR][1000 genomes]
rs10747330	0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs11161785	0.89[YRI][hapmap]
rs1144332	0.89[YRI][hapmap]
rs1146633	0.89[YRI][hapmap]
rs1469988	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs1565718	0.88[YRI][hapmap]
rs1565719	0.88[YRI][hapmap]
rs1616175	0.97[AFR][1000 genomes]
rs1658743	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs1658745	1.00[YRI][hapmap]
rs1658748	0.88[AFR][1000 genomes]
rs1770884	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1770886	0.88[YRI][hapmap]
rs1770888	1.00[YRI][hapmap]
rs1770891	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1796809	1.00[AFR][1000 genomes]
rs1796811	0.88[YRI][hapmap]
rs1873895	0.96[AFR][1000 genomes]
rs2788041	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3819949	0.82[YRI][hapmap]
rs5745532	0.84[YRI][hapmap]
rs995972	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76402800-76420000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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