Variant report

Variant	rs28675110
Chromosome Location	chr1:76531174-76531175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10127768	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1021463	1.00[EUR][1000 genomes]
rs10493581	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10747330	1.00[EUR][1000 genomes]
rs10873786	1.00[EUR][1000 genomes]
rs11161785	1.00[EUR][1000 genomes]
rs11161801	1.00[EUR][1000 genomes]
rs1144344	1.00[ASN][1000 genomes]
rs1146661	1.00[ASN][1000 genomes]
rs12401785	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251499	1.00[EUR][1000 genomes]
rs1251532	1.00[EUR][1000 genomes]
rs1251538	1.00[EUR][1000 genomes]
rs1251554	1.00[EUR][1000 genomes]
rs1251559	1.00[EUR][1000 genomes]
rs1251563	1.00[EUR][1000 genomes]
rs1251589	1.00[EUR][1000 genomes]
rs1251590	1.00[EUR][1000 genomes]
rs1251592	1.00[EUR][1000 genomes]
rs1251593	1.00[EUR][1000 genomes]
rs1469988	1.00[EUR][1000 genomes]
rs1565719	1.00[EUR][1000 genomes]
rs1616175	1.00[EUR][1000 genomes]
rs1658743	1.00[EUR][1000 genomes]
rs17098016	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17098027	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17098034	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098071	1.00[EUR][1000 genomes]
rs1770884	1.00[EUR][1000 genomes]
rs1796809	1.00[EUR][1000 genomes]
rs2347963	1.00[EUR][1000 genomes]
rs60471485	1.00[EUR][1000 genomes]
rs60815815	1.00[EUR][1000 genomes]
rs6691913	1.00[EUR][1000 genomes]
rs6702596	1.00[EUR][1000 genomes]
rs72988548	1.00[EUR][1000 genomes]
rs72988551	1.00[EUR][1000 genomes]
rs72990771	1.00[EUR][1000 genomes]
rs72992611	1.00[EUR][1000 genomes]
rs7515337	1.00[EUR][1000 genomes]
rs7537853	1.00[ASN][1000 genomes]
rs946982	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1477	chr1:76515963-76534339	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv521786	chr1:76525783-76535434	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv871862	chr1:76525783-76598209	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76529800-76531600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr1:76530800-76531200	Enhancers	Fetal Lung	lung
3	chr1:76530800-76531400	Enhancers	Fetal Stomach	stomach
4	chr1:76531000-76531200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:76531000-76531200	Enhancers	A549	lung
6	chr1:76531000-76531400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:76531000-76531400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:76531000-76531400	Enhancers	Fetal Muscle Leg	muscle
9	chr1:76531000-76531400	Enhancers	Stomach Smooth Muscle	stomach

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