Variant report

Variant	rs563562985
Chromosome Location	chr5:94834891-94834892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv598954	chr5:94783175-94859599	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv964908	chr5:94834726-94836764	Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94811200-94835600	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr5:94812400-94835600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:94815400-94853200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:94817200-94849000	Weak transcription	Small Intestine	intestine
6	chr5:94817400-94865600	Strong transcription	Osteobl	bone
7	chr5:94818000-94882400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:94822400-94835800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:94822400-94839600	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:94822400-94840600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:94822400-94847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:94822600-94836400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:94823200-94839600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:94824400-94862200	Weak transcription	Colonic Mucosa	Colon
15	chr5:94824800-94843800	Strong transcription	Liver	Liver
16	chr5:94824800-94847200	Weak transcription	Brain Substantia Nigra	brain
17	chr5:94824800-94866000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:94825000-94835200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:94825000-94886200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:94825200-94835200	Strong transcription	Adipose Nuclei	Adipose
21	chr5:94825200-94866000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:94825400-94835200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr5:94825400-94839800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:94825400-94852200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr5:94825600-94839600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr5:94826000-94839600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr5:94826000-94847400	Weak transcription	Fetal Heart	heart
29	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr5:94826200-94835000	Strong transcription	Primary B cells from cord blood	blood
31	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr5:94827200-94837800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:94827200-94839800	Strong transcription	Primary T cells from cord blood	blood
34	chr5:94827200-94848800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr5:94827200-94865600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:94827200-94866800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr5:94827400-94835200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:94827400-94848800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr5:94827800-94837800	Weak transcription	Fetal Brain Male	brain
41	chr5:94828000-94839600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr5:94828000-94847600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr5:94828600-94839600	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr5:94828600-94873600	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr5:94828800-94835200	Strong transcription	Colon Smooth Muscle	Colon
46	chr5:94828800-94835200	Strong transcription	Fetal Muscle Trunk	muscle
47	chr5:94828800-94835400	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr5:94828800-94835400	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr5:94828800-94839600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr5:94828800-94862600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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