Variant report

Variant	rs56358414
Chromosome Location	chr11:120973516-120973517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs35507522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55885159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56058285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101954	1.00[AMR][1000 genomes]
rs7924686	1.00[AFR][1000 genomes]
rs7938060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7938272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7938285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120942800-120979000	Weak transcription	Aorta	Aorta
2	chr11:120958200-120975200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:120958800-120980600	Weak transcription	Brain Germinal Matrix	brain
4	chr11:120959600-120975800	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:120962600-120976000	Weak transcription	HSMMtube	muscle
6	chr11:120971400-120974600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:120971400-120975000	Weak transcription	Ovary	ovary
8	chr11:120971400-120975200	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:120971600-120975000	Weak transcription	Fetal Lung	lung
10	chr11:120971800-120974600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:120971800-120975000	Weak transcription	Fetal Stomach	stomach
12	chr11:120971800-120983600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:120972200-120975200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:120972600-120975600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:120973000-120975200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:120973400-120974600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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