Variant report

Variant	rs7101954
Chromosome Location	chr11:120924056-120924057
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11601464	1.00[EUR][1000 genomes]
rs11602391	1.00[EUR][1000 genomes]
rs11603987	1.00[EUR][1000 genomes]
rs11604211	1.00[EUR][1000 genomes]
rs11604663	1.00[EUR][1000 genomes]
rs11605695	1.00[EUR][1000 genomes]
rs11606542	1.00[EUR][1000 genomes]
rs11606617	1.00[EUR][1000 genomes]
rs35380371	1.00[EUR][1000 genomes]
rs35507522	1.00[AMR][1000 genomes]
rs55885159	1.00[AMR][1000 genomes]
rs56058285	1.00[AMR][1000 genomes]
rs56358414	1.00[AMR][1000 genomes]
rs7118109	1.00[EUR][1000 genomes]
rs7131216	1.00[EUR][1000 genomes]
rs7934730	1.00[EUR][1000 genomes]
rs7936954	1.00[EUR][1000 genomes]
rs7938060	1.00[AMR][1000 genomes]
rs7938272	1.00[AMR][1000 genomes]
rs7938285	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046688	chr11:120894391-120956305	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1039908	chr11:120904893-120936907	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120896000-120938600	Weak transcription	Lung	lung
2	chr11:120896200-120924200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:120896200-120959600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:120896400-120924400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:120896600-120938200	Weak transcription	Fetal Stomach	stomach
6	chr11:120898800-120938400	Weak transcription	Aorta	Aorta
7	chr11:120900800-120949800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:120901400-120924200	Weak transcription	Right Ventricle	heart
9	chr11:120905600-120924400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:120905800-120941600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:120906000-120924400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:120907200-120924200	Weak transcription	Pancreas	Pancrea
13	chr11:120909000-120956400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:120909800-120924400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:120910000-120924200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:120910000-120966600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:120910200-120938200	Weak transcription	Small Intestine	intestine
18	chr11:120910200-120939600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:120911200-120924200	Weak transcription	Brain Substantia Nigra	brain
20	chr11:120911200-120924200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:120911200-120939600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:120911200-120957400	Weak transcription	Thymus	Thymus
23	chr11:120911200-120961200	Weak transcription	Spleen	Spleen
24	chr11:120912000-120924400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:120912200-120924400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:120912800-120924400	Weak transcription	NH-A	brain
27	chr11:120913200-120924400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:120913600-120924400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:120914000-120948400	Weak transcription	Fetal Heart	heart
30	chr11:120915200-120924400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:120915400-120929400	Strong transcription	Primary hematopoietic stem cells	blood
32	chr11:120915400-120950200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:120915600-120931600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:120915600-120941200	Strong transcription	Primary T cells from cord blood	blood
35	chr11:120915800-120935400	Strong transcription	Fetal Lung	lung
36	chr11:120915800-120940000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:120916000-120924400	Weak transcription	NHLF	lung
38	chr11:120916200-120924400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:120916200-120925000	Weak transcription	NHDF-Ad	bronchial
40	chr11:120916200-120939400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:120916400-120924200	Weak transcription	Fetal Brain Male	brain
42	chr11:120916400-120929200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:120916400-120940600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:120916600-120927400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr11:120916600-120935000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:120916600-120940200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:120916800-120924200	Weak transcription	Colon Smooth Muscle	Colon
48	chr11:120916800-120941000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr11:120916800-120942400	Weak transcription	Esophagus	oesophagus
50	chr11:120917000-120924200	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links