Variant report

Variant	rs11604663
Chromosome Location	chr11:120912678-120912679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11601464	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11602391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11603987	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604211	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11605695	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11606542	1.00[EUR][1000 genomes]
rs11606617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35380371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101954	1.00[EUR][1000 genomes]
rs7118109	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7131216	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7934730	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936954	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7938285	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046688	chr11:120894391-120956305	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1039908	chr11:120904893-120936907	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120895800-120918000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:120896000-120915400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:120896000-120919600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:120896000-120938600	Weak transcription	Lung	lung
5	chr11:120896200-120913000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:120896200-120916200	Weak transcription	HSMM	muscle
7	chr11:120896200-120916400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:120896200-120916600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:120896200-120924200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:120896200-120959600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:120896400-120916600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:120896400-120917800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:120896400-120918000	Weak transcription	Brain Germinal Matrix	brain
14	chr11:120896400-120924400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:120896600-120917200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr11:120896600-120917600	Weak transcription	Fetal Brain Female	brain
17	chr11:120896600-120917800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:120896600-120924000	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:120896600-120938200	Weak transcription	Fetal Stomach	stomach
20	chr11:120896800-120917600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:120898800-120938400	Weak transcription	Aorta	Aorta
22	chr11:120900800-120917800	Weak transcription	HSMMtube	muscle
23	chr11:120900800-120949800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr11:120901000-120917600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:120901200-120918000	Weak transcription	Left Ventricle	heart
26	chr11:120901400-120915600	Weak transcription	Primary T cells from cord blood	blood
27	chr11:120901400-120924200	Weak transcription	Right Ventricle	heart
28	chr11:120901800-120916400	Weak transcription	Primary B cells from cord blood	blood
29	chr11:120903800-120916400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:120905600-120924400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:120905800-120941600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:120906000-120924400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:120906800-120916800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:120907200-120913000	Weak transcription	Fetal Lung	lung
35	chr11:120907200-120918000	Weak transcription	GM12878-XiMat	blood
36	chr11:120907200-120924200	Weak transcription	Pancreas	Pancrea
37	chr11:120907800-120917400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:120908200-120918200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:120909000-120913600	Enhancers	Liver	Liver
40	chr11:120909000-120956400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:120909400-120913200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr11:120909800-120924400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:120910000-120917800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:120910000-120919000	Weak transcription	Fetal Intestine Large	intestine
45	chr11:120910000-120924200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:120910000-120966600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr11:120910200-120917800	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:120910200-120919200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:120910200-120938200	Weak transcription	Small Intestine	intestine
50	chr11:120910200-120939600	Weak transcription	H9 Cell Line	embryonic stem cell

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