Variant report

Variant	rs11606542
Chromosome Location	chr11:120894883-120894884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11601464	1.00[EUR][1000 genomes]
rs11602226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11602391	1.00[EUR][1000 genomes]
rs11603145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11603987	1.00[EUR][1000 genomes]
rs11604211	1.00[EUR][1000 genomes]
rs11604663	1.00[EUR][1000 genomes]
rs11605695	1.00[EUR][1000 genomes]
rs11606486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11606617	1.00[EUR][1000 genomes]
rs35380371	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7101954	1.00[EUR][1000 genomes]
rs7118109	1.00[EUR][1000 genomes]
rs7131216	1.00[EUR][1000 genomes]
rs7934730	1.00[EUR][1000 genomes]
rs7936954	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046688	chr11:120894391-120956305	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120894200-120895400	Active TSS	Brain Substantia Nigra	brain
2	chr11:120894200-120895400	Active TSS	NH-A	brain
3	chr11:120894200-120895600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:120894200-120895600	Flanking Active TSS	Primary B cells from peripheral blood	blood
5	chr11:120894400-120895000	Active TSS	Colonic Mucosa	Colon
6	chr11:120894400-120895200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:120894400-120895200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:120894400-120895200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:120894400-120895200	Active TSS	Adipose Nuclei	Adipose
10	chr11:120894400-120895200	Active TSS	HMEC	breast
11	chr11:120894400-120895200	Active TSS	Monocytes-CD14+_RO01746	blood
12	chr11:120894400-120895400	Active TSS	H1 Cell Line	embryonic stem cell
13	chr11:120894400-120895400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:120894400-120895400	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr11:120894400-120895400	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr11:120894400-120895400	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr11:120894400-120895400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:120894400-120895400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:120894400-120895400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr11:120894400-120895400	Active TSS	Muscle Satellite Cultured Cells	--
21	chr11:120894400-120895400	Active TSS	Aorta	Aorta
22	chr11:120894400-120895400	Active TSS	Brain Angular Gyrus	brain
23	chr11:120894400-120895400	Active TSS	Brain Germinal Matrix	brain
24	chr11:120894400-120895400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:120894400-120895400	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr11:120894400-120895400	Active TSS	Fetal Muscle Trunk	muscle
27	chr11:120894400-120895400	Active TSS	Left Ventricle	heart
28	chr11:120894400-120895400	Active TSS	Psoas Muscle	Psoas
29	chr11:120894400-120895400	Active TSS	K562	blood
30	chr11:120894400-120895600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:120894400-120895600	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr11:120894400-120895600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
33	chr11:120894400-120895600	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
34	chr11:120894400-120895600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:120894400-120895600	Active TSS	Fetal Kidney	kidney
36	chr11:120894400-120895600	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr11:120894400-120895600	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr11:120894400-120895600	Active TSS	A549	lung
39	chr11:120894400-120895600	Active TSS	NHLF	lung
40	chr11:120894400-120895800	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr11:120894400-120895800	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr11:120894400-120895800	Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr11:120894400-120895800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr11:120894400-120895800	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr11:120894400-120895800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:120894400-120895800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:120894400-120896000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:120894400-120896000	Flanking Active TSS	Primary B cells from cord blood	blood
49	chr11:120894400-120896200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:120894400-120896400	Active TSS	Right Atrium	heart

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