Variant report

Variant	rs56366066
Chromosome Location	chr8:130462178-130462179
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130444302..130447418-chr8:130460105..130463114,3	MCF-7	breast:
2	chr8:130451770..130455234-chr8:130460801..130462723,3	K562	blood:
3	chr8:130461276..130464437-chr8:130465643..130469234,4	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16904077	0.81[AMR][1000 genomes]
rs6989725	0.93[AMR][1000 genomes]
rs73391855	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130458800-130463400	Enhancers	Dnd41	blood
2	chr8:130459400-130464600	Genic enhancers	K562	blood
3	chr8:130459400-130471800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr8:130461000-130462400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:130461200-130462400	Enhancers	Fetal Thymus	thymus
6	chr8:130461200-130464000	Enhancers	Fetal Stomach	stomach
7	chr8:130461400-130462200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:130461400-130462400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr8:130461400-130462400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:130461400-130462400	Enhancers	Fetal Muscle Leg	muscle
11	chr8:130461400-130463400	Enhancers	Fetal Heart	heart
12	chr8:130461400-130463600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:130461400-130463800	Enhancers	Stomach Smooth Muscle	stomach
14	chr8:130461600-130462400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:130461800-130462200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr8:130461800-130462200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:130461800-130462400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:130461800-130462400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr8:130461800-130463000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:130461800-130463000	Enhancers	Rectal Smooth Muscle	rectum
21	chr8:130461800-130463200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:130461800-130463400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:130461800-130464000	Enhancers	Colon Smooth Muscle	Colon
24	chr8:130462000-130462200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:130462000-130462400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr8:130462000-130462400	Enhancers	Fetal Muscle Trunk	muscle
27	chr8:130462000-130462400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr8:130462000-130462400	Enhancers	Thymus	Thymus
29	chr8:130462000-130464000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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