Variant report

Variant	rs16904077
Chromosome Location	chr8:130458262-130458263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16904076	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs56366066	0.81[AMR][1000 genomes]
rs58317706	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73709741	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130448600-130458800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr8:130451400-130462000	Weak transcription	Thymus	Thymus
3	chr8:130457800-130458400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:130457800-130458800	Genic enhancers	Dnd41	blood
5	chr8:130457800-130458800	Flanking Active TSS	NHEK	skin
6	chr8:130458000-130458800	Genic enhancers	K562	blood
7	chr8:130458200-130458600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:130458200-130459200	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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