Variant report

Variant	rs73709741
Chromosome Location	chr8:130435165-130435166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16904067	0.81[AFR][1000 genomes]
rs16904068	0.81[AFR][1000 genomes]
rs16904077	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs58317706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59726460	0.81[AFR][1000 genomes]
rs6989725	0.90[AFR][1000 genomes]
rs73712634	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv6394	chr8:130421502-130446035	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3498936	chr8:130434070-130444018	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3498939	chr8:130434470-130444018	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3480631	chr8:130434987-130443051	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3480632	chr8:130435024-130443088	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3498937	chr8:130435065-130443077	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3498942	chr8:130435085-130443122	Genic enhancers Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3498938	chr8:130435102-130442996	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3498940	chr8:130435130-130442953	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130427000-130449000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130429400-130437600	Enhancers	Dnd41	blood
3	chr8:130430200-130435600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:130431200-130436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:130431600-130435800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:130432800-130436600	Enhancers	Fetal Thymus	thymus
7	chr8:130433000-130435200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr8:130433000-130435400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:130433200-130436600	Genic enhancers	K562	blood
10	chr8:130434200-130435600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr8:130434200-130436400	Enhancers	Thymus	Thymus
12	chr8:130434600-130435200	Enhancers	Right Atrium	heart
13	chr8:130434600-130435200	Enhancers	Spleen	Spleen
14	chr8:130434800-130435400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:130434800-130443800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:130435000-130435400	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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