Variant report

Variant	rs59726460
Chromosome Location	chr8:130420834-130420835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16904067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58317706	0.81[AFR][1000 genomes]
rs59091110	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61364475	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6989725	0.82[AFR][1000 genomes]
rs73389389	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73391649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709741	0.81[AFR][1000 genomes]
rs73712634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv968553	chr8:130416069-130423976	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130410200-130434600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130416800-130426600	Strong transcription	K562	blood
3	chr8:130418800-130424000	Weak transcription	Dnd41	blood
4	chr8:130419200-130423400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr8:130419600-130423600	Weak transcription	Fetal Stomach	stomach
6	chr8:130419800-130423200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:130419800-130423600	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:130419800-130425800	Weak transcription	Fetal Thymus	thymus
9	chr8:130419800-130427000	Weak transcription	Thymus	Thymus
10	chr8:130420000-130421600	Enhancers	Fetal Heart	heart
11	chr8:130420000-130424000	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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