Variant report

Variant	rs16904067
Chromosome Location	chr8:130425678-130425679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16904068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58317706	0.81[AFR][1000 genomes]
rs59091110	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59726460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61364475	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6989725	0.82[AFR][1000 genomes]
rs73389389	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73391649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709741	0.81[AFR][1000 genomes]
rs73712634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv6394	chr8:130421502-130446035	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130410200-130434600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130416800-130426600	Strong transcription	K562	blood
3	chr8:130419800-130425800	Weak transcription	Fetal Thymus	thymus
4	chr8:130419800-130427000	Weak transcription	Thymus	Thymus
5	chr8:130424000-130425800	Enhancers	Dnd41	blood
6	chr8:130424200-130426400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:130424200-130427600	Weak transcription	GM12878-XiMat	blood
8	chr8:130424400-130426600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr8:130424600-130426600	Enhancers	Fetal Lung	lung
10	chr8:130425000-130427800	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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